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RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions

The segmentation of COVID-19 lesions from computed tomography (CT) scans is crucial to develop an efficient automated diagnosis system. Deep learning (DL) has shown success in different segmentation tasks. However, an efficient DL approach requires a large amount of accurately annotated data, which...

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Autores principales: Ding, Weiping, Abdel-Basset, Mohamed, Hawash, Hossam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8294559/
https://www.ncbi.nlm.nih.gov/pubmed/34305162
http://dx.doi.org/10.1016/j.ins.2021.07.059
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author Ding, Weiping
Abdel-Basset, Mohamed
Hawash, Hossam
author_facet Ding, Weiping
Abdel-Basset, Mohamed
Hawash, Hossam
author_sort Ding, Weiping
collection PubMed
description The segmentation of COVID-19 lesions from computed tomography (CT) scans is crucial to develop an efficient automated diagnosis system. Deep learning (DL) has shown success in different segmentation tasks. However, an efficient DL approach requires a large amount of accurately annotated data, which is difficult to aggregate owing to the urgent situation of COVID-19. Inaccurate annotation can easily occur without experts, and segmentation performance is substantially worsened by noisy annotations. Therefore, this study presents a reliable and consistent temporal-ensembling (RCTE) framework for semi-supervised lesion segmentation. A segmentation network is integrated into a teacher-student architecture to segment infection regions from a limited number of annotated CT scans and a large number of unannotated CT scans. The network generates reliable and unreliable targets, and to evenly handle these targets potentially degrades performance. To address this, a reliable teacher-student architecture is introduced, where a reliable teacher network is the exponential moving average (EMA) of a reliable student network that is reliably renovated by restraining the student involvement to EMA when its loss is larger. We also present a noise-aware loss based on improvements to generalized cross-entropy loss to lead the segmentation performance toward noisy annotations. Comprehensive analysis validates the robustness of RCTE over recent cutting-edge semi-supervised segmentation techniques, with a 65.87% Dice score.
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spelling pubmed-82945592021-07-21 RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions Ding, Weiping Abdel-Basset, Mohamed Hawash, Hossam Inf Sci (N Y) Article The segmentation of COVID-19 lesions from computed tomography (CT) scans is crucial to develop an efficient automated diagnosis system. Deep learning (DL) has shown success in different segmentation tasks. However, an efficient DL approach requires a large amount of accurately annotated data, which is difficult to aggregate owing to the urgent situation of COVID-19. Inaccurate annotation can easily occur without experts, and segmentation performance is substantially worsened by noisy annotations. Therefore, this study presents a reliable and consistent temporal-ensembling (RCTE) framework for semi-supervised lesion segmentation. A segmentation network is integrated into a teacher-student architecture to segment infection regions from a limited number of annotated CT scans and a large number of unannotated CT scans. The network generates reliable and unreliable targets, and to evenly handle these targets potentially degrades performance. To address this, a reliable teacher-student architecture is introduced, where a reliable teacher network is the exponential moving average (EMA) of a reliable student network that is reliably renovated by restraining the student involvement to EMA when its loss is larger. We also present a noise-aware loss based on improvements to generalized cross-entropy loss to lead the segmentation performance toward noisy annotations. Comprehensive analysis validates the robustness of RCTE over recent cutting-edge semi-supervised segmentation techniques, with a 65.87% Dice score. Elsevier Inc. 2021-11 2021-07-21 /pmc/articles/PMC8294559/ /pubmed/34305162 http://dx.doi.org/10.1016/j.ins.2021.07.059 Text en © 2021 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Ding, Weiping
Abdel-Basset, Mohamed
Hawash, Hossam
RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions
title RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions
title_full RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions
title_fullStr RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions
title_full_unstemmed RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions
title_short RCTE: A reliable and consistent temporal-ensembling framework for semi-supervised segmentation of COVID-19 lesions
title_sort rcte: a reliable and consistent temporal-ensembling framework for semi-supervised segmentation of covid-19 lesions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8294559/
https://www.ncbi.nlm.nih.gov/pubmed/34305162
http://dx.doi.org/10.1016/j.ins.2021.07.059
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