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Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method

The transmission dynamics of COVID-19 is investigated in this study. A SINDy-LM modeling method that can effectively balance model complexity and prediction accuracy is proposed based on data-driven technique. First, the Sparse Identification of Nonlinear Dynamical systems (SINDy) method is used to...

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Autores principales: Jiang, Yu-Xin, Xiong, Xiong, Zhang, Shuo, Wang, Jia-Xiang, Li, Jia-Chun, Du, Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8295551/
https://www.ncbi.nlm.nih.gov/pubmed/34312574
http://dx.doi.org/10.1007/s11071-021-06707-6
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author Jiang, Yu-Xin
Xiong, Xiong
Zhang, Shuo
Wang, Jia-Xiang
Li, Jia-Chun
Du, Lin
author_facet Jiang, Yu-Xin
Xiong, Xiong
Zhang, Shuo
Wang, Jia-Xiang
Li, Jia-Chun
Du, Lin
author_sort Jiang, Yu-Xin
collection PubMed
description The transmission dynamics of COVID-19 is investigated in this study. A SINDy-LM modeling method that can effectively balance model complexity and prediction accuracy is proposed based on data-driven technique. First, the Sparse Identification of Nonlinear Dynamical systems (SINDy) method is used to discover and describe the nonlinear functional relationship between the dynamic terms in the model in accordance with the observation data of the COVID-19 epidemic. Moreover, the Levenberg–Marquardt (LM) algorithm is utilized to optimize the obtained model for improving the accuracy of the SINDy algorithm. Second, the obtained model, which is consistent with the logistic model in mathematical form with small errors and high robustness, is leveraged to review the epidemic situation in China. Otherwise, the evolution of the epidemic in Australia and Egypt is predicted, which demonstrates that this method has universality for constructing the global COVID-19 model. The proposed model is also compared with the extreme learning machine (ELM), which shows that the prediction accuracy of the SINDy-LM method outperforms that of the ELM method and the generated model has higher sparsity.
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spelling pubmed-82955512021-07-22 Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method Jiang, Yu-Xin Xiong, Xiong Zhang, Shuo Wang, Jia-Xiang Li, Jia-Chun Du, Lin Nonlinear Dyn Original Paper The transmission dynamics of COVID-19 is investigated in this study. A SINDy-LM modeling method that can effectively balance model complexity and prediction accuracy is proposed based on data-driven technique. First, the Sparse Identification of Nonlinear Dynamical systems (SINDy) method is used to discover and describe the nonlinear functional relationship between the dynamic terms in the model in accordance with the observation data of the COVID-19 epidemic. Moreover, the Levenberg–Marquardt (LM) algorithm is utilized to optimize the obtained model for improving the accuracy of the SINDy algorithm. Second, the obtained model, which is consistent with the logistic model in mathematical form with small errors and high robustness, is leveraged to review the epidemic situation in China. Otherwise, the evolution of the epidemic in Australia and Egypt is predicted, which demonstrates that this method has universality for constructing the global COVID-19 model. The proposed model is also compared with the extreme learning machine (ELM), which shows that the prediction accuracy of the SINDy-LM method outperforms that of the ELM method and the generated model has higher sparsity. Springer Netherlands 2021-07-22 2021 /pmc/articles/PMC8295551/ /pubmed/34312574 http://dx.doi.org/10.1007/s11071-021-06707-6 Text en © The Author(s), under exclusive licence to Springer Nature B.V. 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Paper
Jiang, Yu-Xin
Xiong, Xiong
Zhang, Shuo
Wang, Jia-Xiang
Li, Jia-Chun
Du, Lin
Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method
title Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method
title_full Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method
title_fullStr Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method
title_full_unstemmed Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method
title_short Modeling and prediction of the transmission dynamics of COVID-19 based on the SINDy-LM method
title_sort modeling and prediction of the transmission dynamics of covid-19 based on the sindy-lm method
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8295551/
https://www.ncbi.nlm.nih.gov/pubmed/34312574
http://dx.doi.org/10.1007/s11071-021-06707-6
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