LGAAP: Leishmaniinae Genome Assembly and Annotation Pipeline

We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for...

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Detalles Bibliográficos
Autores principales: Almutairi, Hatim, Urbaniak, Michael D., Bates, Michelle D., Jariyapan, Narissara, Kwakye-Nuako, Godwin, Thomaz-Soccol, Vanete, Al-Salem, Waleed S., Dillon, Rod J., Bates, Paul A., Gatherer, Derek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Protocols and Workflows
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8297458/
https://www.ncbi.nlm.nih.gov/pubmed/34292068
http://dx.doi.org/10.1128/MRA.00439-21
Descripción
Sumario:We present the LGAAP computational pipeline, which was successfully used to assemble six genomes of the parasite subfamily Leishmaniinae to chromosome-scale completeness from a combination of long- and short-read sequencing data. LGAAP is open source, and we suggest that it may easily be ported for assembly of any genome of comparable size (∼35 Mb).

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