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MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification
In the central and peripheral nervous systems, the myelin sheath promotes neuronal signal transduction. The thickness of the myelin sheath changes during development and in disease conditions like multiple sclerosis. Such changes are routinely detected using electron microscopy through g-ratio quant...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society for Neuroscience
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8298095/ https://www.ncbi.nlm.nih.gov/pubmed/34193510 http://dx.doi.org/10.1523/ENEURO.0558-20.2021 |
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author | Kaiser, Tobias Allen, Harrison Mitchell Kwon, Ohyoon Barak, Boaz Wang, Jing He, Zhigang Jiang, Minqing Feng, Guoping |
author_facet | Kaiser, Tobias Allen, Harrison Mitchell Kwon, Ohyoon Barak, Boaz Wang, Jing He, Zhigang Jiang, Minqing Feng, Guoping |
author_sort | Kaiser, Tobias |
collection | PubMed |
description | In the central and peripheral nervous systems, the myelin sheath promotes neuronal signal transduction. The thickness of the myelin sheath changes during development and in disease conditions like multiple sclerosis. Such changes are routinely detected using electron microscopy through g-ratio quantification. While g-ratio is one of the most critical measurements in myelin studies, a major drawback is that g-ratio quantification is extremely laborious and time-consuming. Here, we report the development and validation of MyelTracer, an installable, stand-alone software for semi-automated g-ratio quantification based on the Open Computer Vision Library (OpenCV). Compared with manual g-ratio quantification, using MyelTracer produces consistent results across multiple tissues and animal ages, as well as in remyelination after optic nerve crush, and reduces total quantification time by 40–60%. With g-ratio measurements via MyelTracer, a known hypomyelination phenotype can be detected in a Williams syndrome mouse model. MyelTracer is easy to use and freely available for Windows and Mac OS X (https://github.com/HarrisonAllen/MyelTracer). |
format | Online Article Text |
id | pubmed-8298095 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Society for Neuroscience |
record_format | MEDLINE/PubMed |
spelling | pubmed-82980952021-07-23 MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification Kaiser, Tobias Allen, Harrison Mitchell Kwon, Ohyoon Barak, Boaz Wang, Jing He, Zhigang Jiang, Minqing Feng, Guoping eNeuro Open Source Tools and Methods In the central and peripheral nervous systems, the myelin sheath promotes neuronal signal transduction. The thickness of the myelin sheath changes during development and in disease conditions like multiple sclerosis. Such changes are routinely detected using electron microscopy through g-ratio quantification. While g-ratio is one of the most critical measurements in myelin studies, a major drawback is that g-ratio quantification is extremely laborious and time-consuming. Here, we report the development and validation of MyelTracer, an installable, stand-alone software for semi-automated g-ratio quantification based on the Open Computer Vision Library (OpenCV). Compared with manual g-ratio quantification, using MyelTracer produces consistent results across multiple tissues and animal ages, as well as in remyelination after optic nerve crush, and reduces total quantification time by 40–60%. With g-ratio measurements via MyelTracer, a known hypomyelination phenotype can be detected in a Williams syndrome mouse model. MyelTracer is easy to use and freely available for Windows and Mac OS X (https://github.com/HarrisonAllen/MyelTracer). Society for Neuroscience 2021-07-21 /pmc/articles/PMC8298095/ /pubmed/34193510 http://dx.doi.org/10.1523/ENEURO.0558-20.2021 Text en Copyright © 2021 Kaiser et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. |
spellingShingle | Open Source Tools and Methods Kaiser, Tobias Allen, Harrison Mitchell Kwon, Ohyoon Barak, Boaz Wang, Jing He, Zhigang Jiang, Minqing Feng, Guoping MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification |
title | MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification |
title_full | MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification |
title_fullStr | MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification |
title_full_unstemmed | MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification |
title_short | MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification |
title_sort | myeltracer: a semi-automated software for myelin g-ratio quantification |
topic | Open Source Tools and Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8298095/ https://www.ncbi.nlm.nih.gov/pubmed/34193510 http://dx.doi.org/10.1523/ENEURO.0558-20.2021 |
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