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MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification

In the central and peripheral nervous systems, the myelin sheath promotes neuronal signal transduction. The thickness of the myelin sheath changes during development and in disease conditions like multiple sclerosis. Such changes are routinely detected using electron microscopy through g-ratio quant...

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Autores principales: Kaiser, Tobias, Allen, Harrison Mitchell, Kwon, Ohyoon, Barak, Boaz, Wang, Jing, He, Zhigang, Jiang, Minqing, Feng, Guoping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society for Neuroscience 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8298095/
https://www.ncbi.nlm.nih.gov/pubmed/34193510
http://dx.doi.org/10.1523/ENEURO.0558-20.2021
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author Kaiser, Tobias
Allen, Harrison Mitchell
Kwon, Ohyoon
Barak, Boaz
Wang, Jing
He, Zhigang
Jiang, Minqing
Feng, Guoping
author_facet Kaiser, Tobias
Allen, Harrison Mitchell
Kwon, Ohyoon
Barak, Boaz
Wang, Jing
He, Zhigang
Jiang, Minqing
Feng, Guoping
author_sort Kaiser, Tobias
collection PubMed
description In the central and peripheral nervous systems, the myelin sheath promotes neuronal signal transduction. The thickness of the myelin sheath changes during development and in disease conditions like multiple sclerosis. Such changes are routinely detected using electron microscopy through g-ratio quantification. While g-ratio is one of the most critical measurements in myelin studies, a major drawback is that g-ratio quantification is extremely laborious and time-consuming. Here, we report the development and validation of MyelTracer, an installable, stand-alone software for semi-automated g-ratio quantification based on the Open Computer Vision Library (OpenCV). Compared with manual g-ratio quantification, using MyelTracer produces consistent results across multiple tissues and animal ages, as well as in remyelination after optic nerve crush, and reduces total quantification time by 40–60%. With g-ratio measurements via MyelTracer, a known hypomyelination phenotype can be detected in a Williams syndrome mouse model. MyelTracer is easy to use and freely available for Windows and Mac OS X (https://github.com/HarrisonAllen/MyelTracer).
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spelling pubmed-82980952021-07-23 MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification Kaiser, Tobias Allen, Harrison Mitchell Kwon, Ohyoon Barak, Boaz Wang, Jing He, Zhigang Jiang, Minqing Feng, Guoping eNeuro Open Source Tools and Methods In the central and peripheral nervous systems, the myelin sheath promotes neuronal signal transduction. The thickness of the myelin sheath changes during development and in disease conditions like multiple sclerosis. Such changes are routinely detected using electron microscopy through g-ratio quantification. While g-ratio is one of the most critical measurements in myelin studies, a major drawback is that g-ratio quantification is extremely laborious and time-consuming. Here, we report the development and validation of MyelTracer, an installable, stand-alone software for semi-automated g-ratio quantification based on the Open Computer Vision Library (OpenCV). Compared with manual g-ratio quantification, using MyelTracer produces consistent results across multiple tissues and animal ages, as well as in remyelination after optic nerve crush, and reduces total quantification time by 40–60%. With g-ratio measurements via MyelTracer, a known hypomyelination phenotype can be detected in a Williams syndrome mouse model. MyelTracer is easy to use and freely available for Windows and Mac OS X (https://github.com/HarrisonAllen/MyelTracer). Society for Neuroscience 2021-07-21 /pmc/articles/PMC8298095/ /pubmed/34193510 http://dx.doi.org/10.1523/ENEURO.0558-20.2021 Text en Copyright © 2021 Kaiser et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
spellingShingle Open Source Tools and Methods
Kaiser, Tobias
Allen, Harrison Mitchell
Kwon, Ohyoon
Barak, Boaz
Wang, Jing
He, Zhigang
Jiang, Minqing
Feng, Guoping
MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification
title MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification
title_full MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification
title_fullStr MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification
title_full_unstemmed MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification
title_short MyelTracer: A Semi-Automated Software for Myelin g-Ratio Quantification
title_sort myeltracer: a semi-automated software for myelin g-ratio quantification
topic Open Source Tools and Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8298095/
https://www.ncbi.nlm.nih.gov/pubmed/34193510
http://dx.doi.org/10.1523/ENEURO.0558-20.2021
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