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An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography

Serial femtosecond crystallography has opened up many new opportunities in structural biology. In recent years, several approaches employing light-inducible systems have emerged to enable time-resolved experiments that reveal protein dynamics at high atomic and temporal resolutions. However, very fe...

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Autores principales: Butryn, Agata, Simon, Philipp S., Aller, Pierre, Hinchliffe, Philip, Massad, Ramzi N., Leen, Gabriel, Tooke, Catherine L., Bogacz, Isabel, Kim, In-Sik, Bhowmick, Asmit, Brewster, Aaron S., Devenish, Nicholas E., Brem, Jürgen, Kamps, Jos J. A. G., Lang, Pauline A., Rabe, Patrick, Axford, Danny, Beale, John H., Davy, Bradley, Ebrahim, Ali, Orlans, Julien, Storm, Selina L. S., Zhou, Tiankun, Owada, Shigeki, Tanaka, Rie, Tono, Kensuke, Evans, Gwyndaf, Owen, Robin L., Houle, Frances A., Sauter, Nicholas K., Schofield, Christopher J., Spencer, James, Yachandra, Vittal K., Yano, Junko, Kern, Jan F., Orville, Allen M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8298390/
https://www.ncbi.nlm.nih.gov/pubmed/34294694
http://dx.doi.org/10.1038/s41467-021-24757-7
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author Butryn, Agata
Simon, Philipp S.
Aller, Pierre
Hinchliffe, Philip
Massad, Ramzi N.
Leen, Gabriel
Tooke, Catherine L.
Bogacz, Isabel
Kim, In-Sik
Bhowmick, Asmit
Brewster, Aaron S.
Devenish, Nicholas E.
Brem, Jürgen
Kamps, Jos J. A. G.
Lang, Pauline A.
Rabe, Patrick
Axford, Danny
Beale, John H.
Davy, Bradley
Ebrahim, Ali
Orlans, Julien
Storm, Selina L. S.
Zhou, Tiankun
Owada, Shigeki
Tanaka, Rie
Tono, Kensuke
Evans, Gwyndaf
Owen, Robin L.
Houle, Frances A.
Sauter, Nicholas K.
Schofield, Christopher J.
Spencer, James
Yachandra, Vittal K.
Yano, Junko
Kern, Jan F.
Orville, Allen M.
author_facet Butryn, Agata
Simon, Philipp S.
Aller, Pierre
Hinchliffe, Philip
Massad, Ramzi N.
Leen, Gabriel
Tooke, Catherine L.
Bogacz, Isabel
Kim, In-Sik
Bhowmick, Asmit
Brewster, Aaron S.
Devenish, Nicholas E.
Brem, Jürgen
Kamps, Jos J. A. G.
Lang, Pauline A.
Rabe, Patrick
Axford, Danny
Beale, John H.
Davy, Bradley
Ebrahim, Ali
Orlans, Julien
Storm, Selina L. S.
Zhou, Tiankun
Owada, Shigeki
Tanaka, Rie
Tono, Kensuke
Evans, Gwyndaf
Owen, Robin L.
Houle, Frances A.
Sauter, Nicholas K.
Schofield, Christopher J.
Spencer, James
Yachandra, Vittal K.
Yano, Junko
Kern, Jan F.
Orville, Allen M.
author_sort Butryn, Agata
collection PubMed
description Serial femtosecond crystallography has opened up many new opportunities in structural biology. In recent years, several approaches employing light-inducible systems have emerged to enable time-resolved experiments that reveal protein dynamics at high atomic and temporal resolutions. However, very few enzymes are light-dependent, whereas macromolecules requiring ligand diffusion into an active site are ubiquitous. In this work we present a drop-on-drop sample delivery system that enables the study of enzyme-catalyzed reactions in microcrystal slurries. The system delivers ligand solutions in bursts of multiple picoliter-sized drops on top of a larger crystal-containing drop inducing turbulent mixing and transports the mixture to the X-ray interaction region with temporal resolution. We demonstrate mixing using fluorescent dyes, numerical simulations and time-resolved serial femtosecond crystallography, which show rapid ligand diffusion through microdroplets. The drop-on-drop method has the potential to be widely applicable to serial crystallography studies, particularly of enzyme reactions with small molecule substrates.
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spelling pubmed-82983902021-08-12 An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography Butryn, Agata Simon, Philipp S. Aller, Pierre Hinchliffe, Philip Massad, Ramzi N. Leen, Gabriel Tooke, Catherine L. Bogacz, Isabel Kim, In-Sik Bhowmick, Asmit Brewster, Aaron S. Devenish, Nicholas E. Brem, Jürgen Kamps, Jos J. A. G. Lang, Pauline A. Rabe, Patrick Axford, Danny Beale, John H. Davy, Bradley Ebrahim, Ali Orlans, Julien Storm, Selina L. S. Zhou, Tiankun Owada, Shigeki Tanaka, Rie Tono, Kensuke Evans, Gwyndaf Owen, Robin L. Houle, Frances A. Sauter, Nicholas K. Schofield, Christopher J. Spencer, James Yachandra, Vittal K. Yano, Junko Kern, Jan F. Orville, Allen M. Nat Commun Article Serial femtosecond crystallography has opened up many new opportunities in structural biology. In recent years, several approaches employing light-inducible systems have emerged to enable time-resolved experiments that reveal protein dynamics at high atomic and temporal resolutions. However, very few enzymes are light-dependent, whereas macromolecules requiring ligand diffusion into an active site are ubiquitous. In this work we present a drop-on-drop sample delivery system that enables the study of enzyme-catalyzed reactions in microcrystal slurries. The system delivers ligand solutions in bursts of multiple picoliter-sized drops on top of a larger crystal-containing drop inducing turbulent mixing and transports the mixture to the X-ray interaction region with temporal resolution. We demonstrate mixing using fluorescent dyes, numerical simulations and time-resolved serial femtosecond crystallography, which show rapid ligand diffusion through microdroplets. The drop-on-drop method has the potential to be widely applicable to serial crystallography studies, particularly of enzyme reactions with small molecule substrates. Nature Publishing Group UK 2021-07-22 /pmc/articles/PMC8298390/ /pubmed/34294694 http://dx.doi.org/10.1038/s41467-021-24757-7 Text en © Crown 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Butryn, Agata
Simon, Philipp S.
Aller, Pierre
Hinchliffe, Philip
Massad, Ramzi N.
Leen, Gabriel
Tooke, Catherine L.
Bogacz, Isabel
Kim, In-Sik
Bhowmick, Asmit
Brewster, Aaron S.
Devenish, Nicholas E.
Brem, Jürgen
Kamps, Jos J. A. G.
Lang, Pauline A.
Rabe, Patrick
Axford, Danny
Beale, John H.
Davy, Bradley
Ebrahim, Ali
Orlans, Julien
Storm, Selina L. S.
Zhou, Tiankun
Owada, Shigeki
Tanaka, Rie
Tono, Kensuke
Evans, Gwyndaf
Owen, Robin L.
Houle, Frances A.
Sauter, Nicholas K.
Schofield, Christopher J.
Spencer, James
Yachandra, Vittal K.
Yano, Junko
Kern, Jan F.
Orville, Allen M.
An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography
title An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography
title_full An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography
title_fullStr An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography
title_full_unstemmed An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography
title_short An on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography
title_sort on-demand, drop-on-drop method for studying enzyme catalysis by serial crystallography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8298390/
https://www.ncbi.nlm.nih.gov/pubmed/34294694
http://dx.doi.org/10.1038/s41467-021-24757-7
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