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A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy

The aim of this study was to identify a urine extracellular vesicle circular RNA (circRNA) classifier that could detect high-grade prostate cancer (PCa) of Grade Group (GG) 2 or greater. For this purpose, we used RNA sequencing to identify candidate circRNAs from urinary extracellular vesicles from...

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Autores principales: He, Ya-Di, Tao, Wen, He, Tao, Wang, Bang-Yu, Tang, Xiu-Mei, Zhang, Liang-Ming, Wu, Zhen-Quan, Deng, Wei-Ming, Zhang, Ling-Xiao, Shao, Chun-Kui, Zhou, Jing, Rong, Li-Min, Gao, Xin, Li, Liao-Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8299620/
https://www.ncbi.nlm.nih.gov/pubmed/34301266
http://dx.doi.org/10.1186/s12943-021-01388-6
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author He, Ya-Di
Tao, Wen
He, Tao
Wang, Bang-Yu
Tang, Xiu-Mei
Zhang, Liang-Ming
Wu, Zhen-Quan
Deng, Wei-Ming
Zhang, Ling-Xiao
Shao, Chun-Kui
Zhou, Jing
Rong, Li-Min
Gao, Xin
Li, Liao-Yuan
author_facet He, Ya-Di
Tao, Wen
He, Tao
Wang, Bang-Yu
Tang, Xiu-Mei
Zhang, Liang-Ming
Wu, Zhen-Quan
Deng, Wei-Ming
Zhang, Ling-Xiao
Shao, Chun-Kui
Zhou, Jing
Rong, Li-Min
Gao, Xin
Li, Liao-Yuan
author_sort He, Ya-Di
collection PubMed
description The aim of this study was to identify a urine extracellular vesicle circular RNA (circRNA) classifier that could detect high-grade prostate cancer (PCa) of Grade Group (GG) 2 or greater. For this purpose, we used RNA sequencing to identify candidate circRNAs from urinary extracellular vesicles from 11 patients with high-grade PCa and 11 case-matched patients with benign prostatic hyperplasia. Using ddPCR in a training cohort (n = 263), we built a urine extracellular vesicle circRNA classifier (Ccirc, containing circPDLIM5, circSCAF8, circPLXDC2, circSCAMP1, and circCCNT2), which was evaluated in two independent cohorts (n = 497, n = 505). Ccirc showed higher accuracy than two standard of care risk calculators (RCs) (PCPT-RC 2.0 and ERSPC-RC) in both the training cohort and the validation cohorts. In all three cohorts, this novel urine extracellular vesicle circRNA classifier plus RCs was statistically more predictive than RCs alone for predicting ≥ GG2 PCa. This assay, which does not require precollection digital rectal examination nor special handling, is repeatable, noninvasive, and can be easily implemented as part of the basic clinical workflow. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12943-021-01388-6.
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spelling pubmed-82996202021-07-28 A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy He, Ya-Di Tao, Wen He, Tao Wang, Bang-Yu Tang, Xiu-Mei Zhang, Liang-Ming Wu, Zhen-Quan Deng, Wei-Ming Zhang, Ling-Xiao Shao, Chun-Kui Zhou, Jing Rong, Li-Min Gao, Xin Li, Liao-Yuan Mol Cancer Letter to the Editor The aim of this study was to identify a urine extracellular vesicle circular RNA (circRNA) classifier that could detect high-grade prostate cancer (PCa) of Grade Group (GG) 2 or greater. For this purpose, we used RNA sequencing to identify candidate circRNAs from urinary extracellular vesicles from 11 patients with high-grade PCa and 11 case-matched patients with benign prostatic hyperplasia. Using ddPCR in a training cohort (n = 263), we built a urine extracellular vesicle circRNA classifier (Ccirc, containing circPDLIM5, circSCAF8, circPLXDC2, circSCAMP1, and circCCNT2), which was evaluated in two independent cohorts (n = 497, n = 505). Ccirc showed higher accuracy than two standard of care risk calculators (RCs) (PCPT-RC 2.0 and ERSPC-RC) in both the training cohort and the validation cohorts. In all three cohorts, this novel urine extracellular vesicle circRNA classifier plus RCs was statistically more predictive than RCs alone for predicting ≥ GG2 PCa. This assay, which does not require precollection digital rectal examination nor special handling, is repeatable, noninvasive, and can be easily implemented as part of the basic clinical workflow. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12943-021-01388-6. BioMed Central 2021-07-23 /pmc/articles/PMC8299620/ /pubmed/34301266 http://dx.doi.org/10.1186/s12943-021-01388-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Letter to the Editor
He, Ya-Di
Tao, Wen
He, Tao
Wang, Bang-Yu
Tang, Xiu-Mei
Zhang, Liang-Ming
Wu, Zhen-Quan
Deng, Wei-Ming
Zhang, Ling-Xiao
Shao, Chun-Kui
Zhou, Jing
Rong, Li-Min
Gao, Xin
Li, Liao-Yuan
A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy
title A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy
title_full A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy
title_fullStr A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy
title_full_unstemmed A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy
title_short A urine extracellular vesicle circRNA classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/mL at initial biopsy
title_sort urine extracellular vesicle circrna classifier for detection of high-grade prostate cancer in patients with prostate-specific antigen 2–10 ng/ml at initial biopsy
topic Letter to the Editor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8299620/
https://www.ncbi.nlm.nih.gov/pubmed/34301266
http://dx.doi.org/10.1186/s12943-021-01388-6
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