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Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia
BACKGROUND: Accumulating studies have been made to understand the association between CXC chemokine ligand-12 (CXCL12)/CXC chemokine receptor 4 (CXCR4) and acute myeloid leukemia (AML). However, large-scale data analysis of potential relationship between CXCL12 and AML remains insufficient. METHODS:...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300536/ https://www.ncbi.nlm.nih.gov/pubmed/34327063 http://dx.doi.org/10.7717/peerj.11820 |
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author | Wang, Shi-sen Xu, Zi-jun Jin, Ye Ma, Ji-chun Xia, Pei-hui Wen, Xiangmei Mao, Zhen-wei Lin, Jiang Qian, Jun |
author_facet | Wang, Shi-sen Xu, Zi-jun Jin, Ye Ma, Ji-chun Xia, Pei-hui Wen, Xiangmei Mao, Zhen-wei Lin, Jiang Qian, Jun |
author_sort | Wang, Shi-sen |
collection | PubMed |
description | BACKGROUND: Accumulating studies have been made to understand the association between CXC chemokine ligand-12 (CXCL12)/CXC chemokine receptor 4 (CXCR4) and acute myeloid leukemia (AML). However, large-scale data analysis of potential relationship between CXCL12 and AML remains insufficient. METHODS: We collected abundant CXCL12 expression data and AML samples from several publicly available datasets. The CIBERSORT algorithm was used to quantify immune cell fractions and the online website of STRING was utilized for gene ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. The statistical analysis and graphical work were mainly performed via the R software. RESULTS: CXCL12 expression was extremely down-regulated in AML. Clinically, low CXCL12 expression was correlated with higher white blood cells (WBCs) (P < 0.0001), more blasts in bone marrow (BM) (P < 0.001) and peripheral blood (PB) (P < 0.0001), FLT3-internal tandem duplications (FLT3-ITD) (P = 0.010) and NPM1 mutations (P = 0.015). More importantly, reduced CXCL12 expression predicted worse overall survival (OS) and event-free survival (EFS) in all AML, non-M3-AML, and cytogenetically normal (CN)-AML patients in three independent cohorts. As for immune cell infiltration, high CXCL12 expressed groups tended to harbor more memory B cells and plasma cells infiltration while low CXCL12 expressed groups exhibited more eosinophils infiltration. GO enrichment and KEGG pathways analysis revealed the potential biological progress the gene participating in. CONCLUSIONS: CXCL12 is significantly down-regulated in AML and low CXCL12 expression is an independent and poor predictor of AML prognosis. CXCL12 expression level correlates with clinical and immune characteristics of AML, which could provide potential assistance for treatment. Prospective studies are needed to further validate the impact of CXCL12 expression before routine clinical application in AML. |
format | Online Article Text |
id | pubmed-8300536 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83005362021-07-28 Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia Wang, Shi-sen Xu, Zi-jun Jin, Ye Ma, Ji-chun Xia, Pei-hui Wen, Xiangmei Mao, Zhen-wei Lin, Jiang Qian, Jun PeerJ Bioinformatics BACKGROUND: Accumulating studies have been made to understand the association between CXC chemokine ligand-12 (CXCL12)/CXC chemokine receptor 4 (CXCR4) and acute myeloid leukemia (AML). However, large-scale data analysis of potential relationship between CXCL12 and AML remains insufficient. METHODS: We collected abundant CXCL12 expression data and AML samples from several publicly available datasets. The CIBERSORT algorithm was used to quantify immune cell fractions and the online website of STRING was utilized for gene ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. The statistical analysis and graphical work were mainly performed via the R software. RESULTS: CXCL12 expression was extremely down-regulated in AML. Clinically, low CXCL12 expression was correlated with higher white blood cells (WBCs) (P < 0.0001), more blasts in bone marrow (BM) (P < 0.001) and peripheral blood (PB) (P < 0.0001), FLT3-internal tandem duplications (FLT3-ITD) (P = 0.010) and NPM1 mutations (P = 0.015). More importantly, reduced CXCL12 expression predicted worse overall survival (OS) and event-free survival (EFS) in all AML, non-M3-AML, and cytogenetically normal (CN)-AML patients in three independent cohorts. As for immune cell infiltration, high CXCL12 expressed groups tended to harbor more memory B cells and plasma cells infiltration while low CXCL12 expressed groups exhibited more eosinophils infiltration. GO enrichment and KEGG pathways analysis revealed the potential biological progress the gene participating in. CONCLUSIONS: CXCL12 is significantly down-regulated in AML and low CXCL12 expression is an independent and poor predictor of AML prognosis. CXCL12 expression level correlates with clinical and immune characteristics of AML, which could provide potential assistance for treatment. Prospective studies are needed to further validate the impact of CXCL12 expression before routine clinical application in AML. PeerJ Inc. 2021-07-20 /pmc/articles/PMC8300536/ /pubmed/34327063 http://dx.doi.org/10.7717/peerj.11820 Text en © 2021 Wang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Wang, Shi-sen Xu, Zi-jun Jin, Ye Ma, Ji-chun Xia, Pei-hui Wen, Xiangmei Mao, Zhen-wei Lin, Jiang Qian, Jun Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia |
title | Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia |
title_full | Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia |
title_fullStr | Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia |
title_full_unstemmed | Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia |
title_short | Clinical and prognostic relevance of CXCL12 expression in acute myeloid leukemia |
title_sort | clinical and prognostic relevance of cxcl12 expression in acute myeloid leukemia |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300536/ https://www.ncbi.nlm.nih.gov/pubmed/34327063 http://dx.doi.org/10.7717/peerj.11820 |
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