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DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene
Andaliman (Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA matura...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Penerbit Universiti Sains Malaysia
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300946/ https://www.ncbi.nlm.nih.gov/pubmed/34367512 http://dx.doi.org/10.21315/tlsr2021.32.2.2 |
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author | Suriani, Cicik Prasetya, Eko Harsono, Tri Manurung, Johannes Prakasa, Hary Handayani, Dina Jannah, Miftahul Rachmawati, Yuanita |
author_facet | Suriani, Cicik Prasetya, Eko Harsono, Tri Manurung, Johannes Prakasa, Hary Handayani, Dina Jannah, Miftahul Rachmawati, Yuanita |
author_sort | Suriani, Cicik |
collection | PubMed |
description | Andaliman (Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA maturase K (matK). Samples were collected in seven localities across six regions of North Sumatra province. Phylogenetic analysis was conducted using Maximum Likelihood method. The results of phylogenetic analysis indicate that Z. acanthopodium is a monophyletic group that is derived from a common ancestor. The results of the phylogenetic tree construction show that there is a grouping of accession between Z. acanthopodium species separate from other species in the Zanthoxylum genus as well as those of the Rutaceae family. The results showed that cpDNA matK marker can effectively be used as DNA barcoding to identify Z. acanthopodium. |
format | Online Article Text |
id | pubmed-8300946 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Penerbit Universiti Sains Malaysia |
record_format | MEDLINE/PubMed |
spelling | pubmed-83009462021-08-05 DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene Suriani, Cicik Prasetya, Eko Harsono, Tri Manurung, Johannes Prakasa, Hary Handayani, Dina Jannah, Miftahul Rachmawati, Yuanita Trop Life Sci Res Article Andaliman (Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA maturase K (matK). Samples were collected in seven localities across six regions of North Sumatra province. Phylogenetic analysis was conducted using Maximum Likelihood method. The results of phylogenetic analysis indicate that Z. acanthopodium is a monophyletic group that is derived from a common ancestor. The results of the phylogenetic tree construction show that there is a grouping of accession between Z. acanthopodium species separate from other species in the Zanthoxylum genus as well as those of the Rutaceae family. The results showed that cpDNA matK marker can effectively be used as DNA barcoding to identify Z. acanthopodium. Penerbit Universiti Sains Malaysia 2021-06 2021-06-29 /pmc/articles/PMC8300946/ /pubmed/34367512 http://dx.doi.org/10.21315/tlsr2021.32.2.2 Text en © Penerbit Universiti Sains Malaysia, 2021 https://creativecommons.org/licenses/by/4.0/This work is licensed under the terms of the Creative Commons Attribution (CC BY) (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ). |
spellingShingle | Article Suriani, Cicik Prasetya, Eko Harsono, Tri Manurung, Johannes Prakasa, Hary Handayani, Dina Jannah, Miftahul Rachmawati, Yuanita DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene |
title | DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene |
title_full | DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene |
title_fullStr | DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene |
title_full_unstemmed | DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene |
title_short | DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene |
title_sort | dna barcoding of andaliman (zanthoxylum acanthopodium dc) from north sumatra province of indonesia using maturase k gene |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300946/ https://www.ncbi.nlm.nih.gov/pubmed/34367512 http://dx.doi.org/10.21315/tlsr2021.32.2.2 |
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