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DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene

Andaliman (Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA matura...

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Autores principales: Suriani, Cicik, Prasetya, Eko, Harsono, Tri, Manurung, Johannes, Prakasa, Hary, Handayani, Dina, Jannah, Miftahul, Rachmawati, Yuanita
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Penerbit Universiti Sains Malaysia 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300946/
https://www.ncbi.nlm.nih.gov/pubmed/34367512
http://dx.doi.org/10.21315/tlsr2021.32.2.2
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author Suriani, Cicik
Prasetya, Eko
Harsono, Tri
Manurung, Johannes
Prakasa, Hary
Handayani, Dina
Jannah, Miftahul
Rachmawati, Yuanita
author_facet Suriani, Cicik
Prasetya, Eko
Harsono, Tri
Manurung, Johannes
Prakasa, Hary
Handayani, Dina
Jannah, Miftahul
Rachmawati, Yuanita
author_sort Suriani, Cicik
collection PubMed
description Andaliman (Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA maturase K (matK). Samples were collected in seven localities across six regions of North Sumatra province. Phylogenetic analysis was conducted using Maximum Likelihood method. The results of phylogenetic analysis indicate that Z. acanthopodium is a monophyletic group that is derived from a common ancestor. The results of the phylogenetic tree construction show that there is a grouping of accession between Z. acanthopodium species separate from other species in the Zanthoxylum genus as well as those of the Rutaceae family. The results showed that cpDNA matK marker can effectively be used as DNA barcoding to identify Z. acanthopodium.
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spelling pubmed-83009462021-08-05 DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene Suriani, Cicik Prasetya, Eko Harsono, Tri Manurung, Johannes Prakasa, Hary Handayani, Dina Jannah, Miftahul Rachmawati, Yuanita Trop Life Sci Res Article Andaliman (Zanthoxylum acanthopodium DC) is a native plant of North Sumatra province. Zanthoxylum acanthopodium is a member of Rutaceae family widely found in northern Sumatra, Indonesia. The aim of this study was to barcode Z. acanthopodium in North Sumatra province, Indonesia based on cpDNA maturase K (matK). Samples were collected in seven localities across six regions of North Sumatra province. Phylogenetic analysis was conducted using Maximum Likelihood method. The results of phylogenetic analysis indicate that Z. acanthopodium is a monophyletic group that is derived from a common ancestor. The results of the phylogenetic tree construction show that there is a grouping of accession between Z. acanthopodium species separate from other species in the Zanthoxylum genus as well as those of the Rutaceae family. The results showed that cpDNA matK marker can effectively be used as DNA barcoding to identify Z. acanthopodium. Penerbit Universiti Sains Malaysia 2021-06 2021-06-29 /pmc/articles/PMC8300946/ /pubmed/34367512 http://dx.doi.org/10.21315/tlsr2021.32.2.2 Text en © Penerbit Universiti Sains Malaysia, 2021 https://creativecommons.org/licenses/by/4.0/This work is licensed under the terms of the Creative Commons Attribution (CC BY) (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Suriani, Cicik
Prasetya, Eko
Harsono, Tri
Manurung, Johannes
Prakasa, Hary
Handayani, Dina
Jannah, Miftahul
Rachmawati, Yuanita
DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene
title DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene
title_full DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene
title_fullStr DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene
title_full_unstemmed DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene
title_short DNA Barcoding of Andaliman (Zanthoxylum acanthopodium DC) from North Sumatra Province of Indonesia Using Maturase K Gene
title_sort dna barcoding of andaliman (zanthoxylum acanthopodium dc) from north sumatra province of indonesia using maturase k gene
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300946/
https://www.ncbi.nlm.nih.gov/pubmed/34367512
http://dx.doi.org/10.21315/tlsr2021.32.2.2
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