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A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data

Oxidative stress aggravates the progression of lifestyle-related chronic diseases. However, knowledge and practices that enable quantifying oxidative stress are still lacking. Here, we performed a proof-of-concept study to predict the oxidative stress status in a healthy population using retrospecti...

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Autores principales: Kim, Youjin, Kim, Yunsoo, Hwang, Jiyoung, van den Broek, Tim J., Oh, Bumjo, Kim, Ji Yeon, Wopereis, Suzan, Bouwman, Jildau, Kwon, Oran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8301183/
https://www.ncbi.nlm.nih.gov/pubmed/34356365
http://dx.doi.org/10.3390/antiox10071132
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author Kim, Youjin
Kim, Yunsoo
Hwang, Jiyoung
van den Broek, Tim J.
Oh, Bumjo
Kim, Ji Yeon
Wopereis, Suzan
Bouwman, Jildau
Kwon, Oran
author_facet Kim, Youjin
Kim, Yunsoo
Hwang, Jiyoung
van den Broek, Tim J.
Oh, Bumjo
Kim, Ji Yeon
Wopereis, Suzan
Bouwman, Jildau
Kwon, Oran
author_sort Kim, Youjin
collection PubMed
description Oxidative stress aggravates the progression of lifestyle-related chronic diseases. However, knowledge and practices that enable quantifying oxidative stress are still lacking. Here, we performed a proof-of-concept study to predict the oxidative stress status in a healthy population using retrospective cohort data from Boramae medical center in Korea (n = 1328). To obtain binary performance measures, we selected healthy controls versus oxidative disease cases based on the “health space” statistical methodology. We then developed a machine learning algorithm for discrimination of oxidative stress status using least absolute shrinkage and selection operator (LASSO)/elastic net regression with 10-fold cross-validation. A proposed fine-tune model included 16 features out of the full spectrum of diverse and complex data. The predictive performance was externally evaluated by generating receiver operating characteristic curves with area under the curve of 0.949 (CI 0.925 to 0.974), sensitivity of 0.923 (CI 0.879 to 0.967), and specificity of 0.855 (CI 0.795 to 0.915). Moreover, the discrimination power was confirmed by applying the proposed diagnostic model to the full dataset consisting of subjects with various degrees of oxidative stress. The results provide a feasible approach for stratifying the oxidative stress risks in the healthy population and selecting appropriate strategies for individual subjects toward implementing data-driven precision nutrition.
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spelling pubmed-83011832021-07-24 A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data Kim, Youjin Kim, Yunsoo Hwang, Jiyoung van den Broek, Tim J. Oh, Bumjo Kim, Ji Yeon Wopereis, Suzan Bouwman, Jildau Kwon, Oran Antioxidants (Basel) Article Oxidative stress aggravates the progression of lifestyle-related chronic diseases. However, knowledge and practices that enable quantifying oxidative stress are still lacking. Here, we performed a proof-of-concept study to predict the oxidative stress status in a healthy population using retrospective cohort data from Boramae medical center in Korea (n = 1328). To obtain binary performance measures, we selected healthy controls versus oxidative disease cases based on the “health space” statistical methodology. We then developed a machine learning algorithm for discrimination of oxidative stress status using least absolute shrinkage and selection operator (LASSO)/elastic net regression with 10-fold cross-validation. A proposed fine-tune model included 16 features out of the full spectrum of diverse and complex data. The predictive performance was externally evaluated by generating receiver operating characteristic curves with area under the curve of 0.949 (CI 0.925 to 0.974), sensitivity of 0.923 (CI 0.879 to 0.967), and specificity of 0.855 (CI 0.795 to 0.915). Moreover, the discrimination power was confirmed by applying the proposed diagnostic model to the full dataset consisting of subjects with various degrees of oxidative stress. The results provide a feasible approach for stratifying the oxidative stress risks in the healthy population and selecting appropriate strategies for individual subjects toward implementing data-driven precision nutrition. MDPI 2021-07-16 /pmc/articles/PMC8301183/ /pubmed/34356365 http://dx.doi.org/10.3390/antiox10071132 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kim, Youjin
Kim, Yunsoo
Hwang, Jiyoung
van den Broek, Tim J.
Oh, Bumjo
Kim, Ji Yeon
Wopereis, Suzan
Bouwman, Jildau
Kwon, Oran
A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data
title A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data
title_full A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data
title_fullStr A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data
title_full_unstemmed A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data
title_short A Machine Learning Algorithm for Quantitatively Diagnosing Oxidative Stress Risks in Healthy Adult Individuals Based on Health Space Methodology: A Proof-of-Concept Study Using Korean Cross-Sectional Cohort Data
title_sort machine learning algorithm for quantitatively diagnosing oxidative stress risks in healthy adult individuals based on health space methodology: a proof-of-concept study using korean cross-sectional cohort data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8301183/
https://www.ncbi.nlm.nih.gov/pubmed/34356365
http://dx.doi.org/10.3390/antiox10071132
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