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Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis

Sepsis is a major cause of mortality among hospitalized patients worldwide. Shorter time to administration of broad‐spectrum antibiotics is associated with improved outcomes, but early recognition of sepsis remains a major challenge. In a two‐center cohort study with prospective sample collection fr...

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Autores principales: Taneja, Ishan, Damhorst, Gregory L., Lopez‐Espina, Carlos, Zhao, Sihai Dave, Zhu, Ruoqing, Khan, Shah, White, Karen, Kumar, James, Vincent, Andrew, Yeh, Leon, Majdizadeh, Shirin, Weir, William, Isbell, Scott, Skinner, James, Devanand, Manubolo, Azharuddin, Syed, Meenakshisundaram, Rajamurugan, Upadhyay, Riddhi, Syed, Anwaruddin, Bauman, Thomas, Devito, Joseph, Heinzmann, Charles, Podolej, Gregory, Shen, Lanxin, Timilsina, Sanjay Sharma, Quinlan, Lucas, Manafirasi, Setareh, Valera, Enrique, Reddy, Bobby, Bashir, Rashid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8301583/
https://www.ncbi.nlm.nih.gov/pubmed/33786999
http://dx.doi.org/10.1111/cts.13030
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author Taneja, Ishan
Damhorst, Gregory L.
Lopez‐Espina, Carlos
Zhao, Sihai Dave
Zhu, Ruoqing
Khan, Shah
White, Karen
Kumar, James
Vincent, Andrew
Yeh, Leon
Majdizadeh, Shirin
Weir, William
Isbell, Scott
Skinner, James
Devanand, Manubolo
Azharuddin, Syed
Meenakshisundaram, Rajamurugan
Upadhyay, Riddhi
Syed, Anwaruddin
Bauman, Thomas
Devito, Joseph
Heinzmann, Charles
Podolej, Gregory
Shen, Lanxin
Timilsina, Sanjay Sharma
Quinlan, Lucas
Manafirasi, Setareh
Valera, Enrique
Reddy, Bobby
Bashir, Rashid
author_facet Taneja, Ishan
Damhorst, Gregory L.
Lopez‐Espina, Carlos
Zhao, Sihai Dave
Zhu, Ruoqing
Khan, Shah
White, Karen
Kumar, James
Vincent, Andrew
Yeh, Leon
Majdizadeh, Shirin
Weir, William
Isbell, Scott
Skinner, James
Devanand, Manubolo
Azharuddin, Syed
Meenakshisundaram, Rajamurugan
Upadhyay, Riddhi
Syed, Anwaruddin
Bauman, Thomas
Devito, Joseph
Heinzmann, Charles
Podolej, Gregory
Shen, Lanxin
Timilsina, Sanjay Sharma
Quinlan, Lucas
Manafirasi, Setareh
Valera, Enrique
Reddy, Bobby
Bashir, Rashid
author_sort Taneja, Ishan
collection PubMed
description Sepsis is a major cause of mortality among hospitalized patients worldwide. Shorter time to administration of broad‐spectrum antibiotics is associated with improved outcomes, but early recognition of sepsis remains a major challenge. In a two‐center cohort study with prospective sample collection from 1400 adult patients in emergency departments suspected of sepsis, we sought to determine the diagnostic and prognostic capabilities of a machine‐learning algorithm based on clinical data and a set of uncommonly measured biomarkers. Specifically, we demonstrate that a machine‐learning model developed using this dataset outputs a score with not only diagnostic capability but also prognostic power with respect to hospital length of stay (LOS), 30‐day mortality, and 3‐day inpatient re‐admission both in our entire testing cohort and various subpopulations. The area under the receiver operating curve (AUROC) for diagnosis of sepsis was 0.83. Predicted risk scores for patients with septic shock were higher compared with patients with sepsis but without shock (p < 0.0001). Scores for patients with infection and organ dysfunction were higher compared with those without either condition (p < 0.0001). Stratification based on predicted scores of the patients into low, medium, and high‐risk groups showed significant differences in LOS (p < 0.0001), 30‐day mortality (p < 0.0001), and 30‐day inpatient readmission (p < 0.0001). In conclusion, a machine‐learning algorithm based on electronic medical record (EMR) data and three nonroutinely measured biomarkers demonstrated good diagnostic and prognostic capability at the time of initial blood culture.
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spelling pubmed-83015832021-07-27 Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis Taneja, Ishan Damhorst, Gregory L. Lopez‐Espina, Carlos Zhao, Sihai Dave Zhu, Ruoqing Khan, Shah White, Karen Kumar, James Vincent, Andrew Yeh, Leon Majdizadeh, Shirin Weir, William Isbell, Scott Skinner, James Devanand, Manubolo Azharuddin, Syed Meenakshisundaram, Rajamurugan Upadhyay, Riddhi Syed, Anwaruddin Bauman, Thomas Devito, Joseph Heinzmann, Charles Podolej, Gregory Shen, Lanxin Timilsina, Sanjay Sharma Quinlan, Lucas Manafirasi, Setareh Valera, Enrique Reddy, Bobby Bashir, Rashid Clin Transl Sci Research Sepsis is a major cause of mortality among hospitalized patients worldwide. Shorter time to administration of broad‐spectrum antibiotics is associated with improved outcomes, but early recognition of sepsis remains a major challenge. In a two‐center cohort study with prospective sample collection from 1400 adult patients in emergency departments suspected of sepsis, we sought to determine the diagnostic and prognostic capabilities of a machine‐learning algorithm based on clinical data and a set of uncommonly measured biomarkers. Specifically, we demonstrate that a machine‐learning model developed using this dataset outputs a score with not only diagnostic capability but also prognostic power with respect to hospital length of stay (LOS), 30‐day mortality, and 3‐day inpatient re‐admission both in our entire testing cohort and various subpopulations. The area under the receiver operating curve (AUROC) for diagnosis of sepsis was 0.83. Predicted risk scores for patients with septic shock were higher compared with patients with sepsis but without shock (p < 0.0001). Scores for patients with infection and organ dysfunction were higher compared with those without either condition (p < 0.0001). Stratification based on predicted scores of the patients into low, medium, and high‐risk groups showed significant differences in LOS (p < 0.0001), 30‐day mortality (p < 0.0001), and 30‐day inpatient readmission (p < 0.0001). In conclusion, a machine‐learning algorithm based on electronic medical record (EMR) data and three nonroutinely measured biomarkers demonstrated good diagnostic and prognostic capability at the time of initial blood culture. John Wiley and Sons Inc. 2021-05-02 2021-07 /pmc/articles/PMC8301583/ /pubmed/33786999 http://dx.doi.org/10.1111/cts.13030 Text en © 2021 The Authors. Clinical and Translational Science published by Wiley Periodicals LLC on behalf of the American Society for Clinical Pharmacology and Therapeutics. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research
Taneja, Ishan
Damhorst, Gregory L.
Lopez‐Espina, Carlos
Zhao, Sihai Dave
Zhu, Ruoqing
Khan, Shah
White, Karen
Kumar, James
Vincent, Andrew
Yeh, Leon
Majdizadeh, Shirin
Weir, William
Isbell, Scott
Skinner, James
Devanand, Manubolo
Azharuddin, Syed
Meenakshisundaram, Rajamurugan
Upadhyay, Riddhi
Syed, Anwaruddin
Bauman, Thomas
Devito, Joseph
Heinzmann, Charles
Podolej, Gregory
Shen, Lanxin
Timilsina, Sanjay Sharma
Quinlan, Lucas
Manafirasi, Setareh
Valera, Enrique
Reddy, Bobby
Bashir, Rashid
Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis
title Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis
title_full Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis
title_fullStr Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis
title_full_unstemmed Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis
title_short Diagnostic and prognostic capabilities of a biomarker and EMR‐based machine learning algorithm for sepsis
title_sort diagnostic and prognostic capabilities of a biomarker and emr‐based machine learning algorithm for sepsis
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8301583/
https://www.ncbi.nlm.nih.gov/pubmed/33786999
http://dx.doi.org/10.1111/cts.13030
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