Cargando…
Strainberry: automated strain separation in low-complexity metagenomes using long reads
High-throughput short-read metagenomics has enabled large-scale species-level analysis and functional characterization of microbial communities. Microbiomes often contain multiple strains of the same species, and different strains have been shown to have important differences in their functional rol...
Autores principales: | Vicedomini, Riccardo, Quince, Christopher, Darling, Aaron E., Chikhi, Rayan |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8302730/ https://www.ncbi.nlm.nih.gov/pubmed/34301928 http://dx.doi.org/10.1038/s41467-021-24515-9 |
Ejemplares similares
-
STRONG: metagenomics strain resolution on assembly graphs
por: Quince, Christopher, et al.
Publicado: (2021) -
Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs
por: Benoit, Gaëtan, et al.
Publicado: (2023) -
aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
por: Duitama González, Camila, et al.
Publicado: (2023) -
DESMAN: a new tool for de novo extraction of strains from metagenomes
por: Quince, Christopher, et al.
Publicado: (2017) -
decOM: similarity-based microbial source tracking of ancient oral samples using k-mer-based methods
por: Duitama González, Camila, et al.
Publicado: (2023)