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Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto

Although multiple attempts have been made to mathematically model the current epidemic of SARS-CoV-2, the causative agent of coronavirus disease 2019 (COVID-19), few models have been conceived as accessible interactive tools for users from various backgrounds. The goal of this study was to develop a...

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Detalles Bibliográficos
Autores principales: Morando, Nicolás, Sanfilippo, Mauricio, Herrero, Francisco, Iturburu, Matías, Torti, Ariel, Gutson, Daniel, Pando, María A., Rabinovich, Roberto Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Asociación Argentina de Microbiología. Published by Elsevier España, S.L.U. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8302851/
https://www.ncbi.nlm.nih.gov/pubmed/34509309
http://dx.doi.org/10.1016/j.ram.2021.04.004
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author Morando, Nicolás
Sanfilippo, Mauricio
Herrero, Francisco
Iturburu, Matías
Torti, Ariel
Gutson, Daniel
Pando, María A.
Rabinovich, Roberto Daniel
author_facet Morando, Nicolás
Sanfilippo, Mauricio
Herrero, Francisco
Iturburu, Matías
Torti, Ariel
Gutson, Daniel
Pando, María A.
Rabinovich, Roberto Daniel
author_sort Morando, Nicolás
collection PubMed
description Although multiple attempts have been made to mathematically model the current epidemic of SARS-CoV-2, the causative agent of coronavirus disease 2019 (COVID-19), few models have been conceived as accessible interactive tools for users from various backgrounds. The goal of this study was to develop a model that took into account the heterogeneity in contact rates within the population and to implement it in an accessible application allowing to estimate the impact of possible interventions based on available information. An extended version of the Susceptible-Exposed-Infected-Resistant (SEIR) model, named SEIR-HL, was developed, assuming a population divided into two subpopulations, with different contact rates. Additionally, a formula for the calculation of the basic reproduction number (R(0)) for a population divided into n subpopulations was proposed, where the contact rates for each subpopulation can be distinguished according to contact type or context. The predictions made by SEIR-HL were compared to those of SEIR, showing that the heterogeneity in contact rates can dramatically affect the dynamics of simulations, even when run from the same initial conditions and with the same parameters. SEIR-HL was used to predict the effect on the epidemic evolution of the displacement of individuals from high-contact positions to low-contact positions. Lastly, by way of example, SEIR-HL was applied to the analysis of the SARS-CoV-2 epidemic in Argentina and an example of the application of the R(0) formula was also developed. Both the SEIR-HL model and an R(0) calculator were computerized and made available to the community.
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spelling pubmed-83028512021-07-26 Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto Morando, Nicolás Sanfilippo, Mauricio Herrero, Francisco Iturburu, Matías Torti, Ariel Gutson, Daniel Pando, María A. Rabinovich, Roberto Daniel Rev Argent Microbiol Original Although multiple attempts have been made to mathematically model the current epidemic of SARS-CoV-2, the causative agent of coronavirus disease 2019 (COVID-19), few models have been conceived as accessible interactive tools for users from various backgrounds. The goal of this study was to develop a model that took into account the heterogeneity in contact rates within the population and to implement it in an accessible application allowing to estimate the impact of possible interventions based on available information. An extended version of the Susceptible-Exposed-Infected-Resistant (SEIR) model, named SEIR-HL, was developed, assuming a population divided into two subpopulations, with different contact rates. Additionally, a formula for the calculation of the basic reproduction number (R(0)) for a population divided into n subpopulations was proposed, where the contact rates for each subpopulation can be distinguished according to contact type or context. The predictions made by SEIR-HL were compared to those of SEIR, showing that the heterogeneity in contact rates can dramatically affect the dynamics of simulations, even when run from the same initial conditions and with the same parameters. SEIR-HL was used to predict the effect on the epidemic evolution of the displacement of individuals from high-contact positions to low-contact positions. Lastly, by way of example, SEIR-HL was applied to the analysis of the SARS-CoV-2 epidemic in Argentina and an example of the application of the R(0) formula was also developed. Both the SEIR-HL model and an R(0) calculator were computerized and made available to the community. Asociación Argentina de Microbiología. Published by Elsevier España, S.L.U. 2022 2021-07-24 /pmc/articles/PMC8302851/ /pubmed/34509309 http://dx.doi.org/10.1016/j.ram.2021.04.004 Text en © 2021 Asociación Argentina de Microbiología. Published by Elsevier España, S.L.U. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Original
Morando, Nicolás
Sanfilippo, Mauricio
Herrero, Francisco
Iturburu, Matías
Torti, Ariel
Gutson, Daniel
Pando, María A.
Rabinovich, Roberto Daniel
Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto
title Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto
title_full Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto
title_fullStr Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto
title_full_unstemmed Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto
title_short Evaluación de intervenciones durante la pandemia COVID-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto
title_sort evaluación de intervenciones durante la pandemia covid-19: desarrollo de un modelo basado en subpoblaciones con distintas tasas de contacto
topic Original
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8302851/
https://www.ncbi.nlm.nih.gov/pubmed/34509309
http://dx.doi.org/10.1016/j.ram.2021.04.004
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