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Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments

We showcase the combination of experimental neutron scattering data and molecular dynamics (MD) simulations for exemplary phospholipid membrane systems. Neutron and X-ray reflectometry and small-angle scattering measurements are determined by the scattering length density profile in real space, but...

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Autores principales: Zec, Nebojša, Mangiapia, Gaetano, Hendry, Alex C., Barker, Robert, Koutsioubas, Alexandros, Frielinghaus, Henrich, Campana, Mario, Ortega-Roldan, José Luis, Busch, Sebastian, Moulin, Jean-François
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8304056/
https://www.ncbi.nlm.nih.gov/pubmed/34357157
http://dx.doi.org/10.3390/membranes11070507
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author Zec, Nebojša
Mangiapia, Gaetano
Hendry, Alex C.
Barker, Robert
Koutsioubas, Alexandros
Frielinghaus, Henrich
Campana, Mario
Ortega-Roldan, José Luis
Busch, Sebastian
Moulin, Jean-François
author_facet Zec, Nebojša
Mangiapia, Gaetano
Hendry, Alex C.
Barker, Robert
Koutsioubas, Alexandros
Frielinghaus, Henrich
Campana, Mario
Ortega-Roldan, José Luis
Busch, Sebastian
Moulin, Jean-François
author_sort Zec, Nebojša
collection PubMed
description We showcase the combination of experimental neutron scattering data and molecular dynamics (MD) simulations for exemplary phospholipid membrane systems. Neutron and X-ray reflectometry and small-angle scattering measurements are determined by the scattering length density profile in real space, but it is not usually possible to retrieve this profile unambiguously from the data alone. MD simulations predict these density profiles, but they require experimental control. Both issues can be addressed simultaneously by cross-validating scattering data and MD results. The strengths and weaknesses of each technique are discussed in detail with the aim of optimizing the opportunities provided by this combination.
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spelling pubmed-83040562021-07-25 Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments Zec, Nebojša Mangiapia, Gaetano Hendry, Alex C. Barker, Robert Koutsioubas, Alexandros Frielinghaus, Henrich Campana, Mario Ortega-Roldan, José Luis Busch, Sebastian Moulin, Jean-François Membranes (Basel) Article We showcase the combination of experimental neutron scattering data and molecular dynamics (MD) simulations for exemplary phospholipid membrane systems. Neutron and X-ray reflectometry and small-angle scattering measurements are determined by the scattering length density profile in real space, but it is not usually possible to retrieve this profile unambiguously from the data alone. MD simulations predict these density profiles, but they require experimental control. Both issues can be addressed simultaneously by cross-validating scattering data and MD results. The strengths and weaknesses of each technique are discussed in detail with the aim of optimizing the opportunities provided by this combination. MDPI 2021-07-05 /pmc/articles/PMC8304056/ /pubmed/34357157 http://dx.doi.org/10.3390/membranes11070507 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zec, Nebojša
Mangiapia, Gaetano
Hendry, Alex C.
Barker, Robert
Koutsioubas, Alexandros
Frielinghaus, Henrich
Campana, Mario
Ortega-Roldan, José Luis
Busch, Sebastian
Moulin, Jean-François
Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments
title Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments
title_full Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments
title_fullStr Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments
title_full_unstemmed Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments
title_short Mutually Beneficial Combination of Molecular Dynamics Computer Simulations and Scattering Experiments
title_sort mutually beneficial combination of molecular dynamics computer simulations and scattering experiments
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8304056/
https://www.ncbi.nlm.nih.gov/pubmed/34357157
http://dx.doi.org/10.3390/membranes11070507
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