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An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D
NMR spectroscopy is a widely used method for the detection and quantification of metabolites in complex biological fluids. However, the large number of metabolites present in a biological sample such as urine or plasma leads to considerable signal overlap in one-dimensional NMR spectra, which in tur...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8305572/ https://www.ncbi.nlm.nih.gov/pubmed/34357346 http://dx.doi.org/10.3390/metabo11070452 |
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author | Häckl, Martina Tauber, Philipp Schweda, Frank Zacharias, Helena U. Altenbuchinger, Michael Oefner, Peter J. Gronwald, Wolfram |
author_facet | Häckl, Martina Tauber, Philipp Schweda, Frank Zacharias, Helena U. Altenbuchinger, Michael Oefner, Peter J. Gronwald, Wolfram |
author_sort | Häckl, Martina |
collection | PubMed |
description | NMR spectroscopy is a widely used method for the detection and quantification of metabolites in complex biological fluids. However, the large number of metabolites present in a biological sample such as urine or plasma leads to considerable signal overlap in one-dimensional NMR spectra, which in turn hampers both signal identification and quantification. As a consequence, we have developed an easy to use R-package that allows the fully automated deconvolution of overlapping signals in the underlying Lorentzian line-shapes. We show that precise integral values are computed, which are required to obtain both relative and absolute quantitative information. The algorithm is independent of any knowledge of the corresponding metabolites, which also allows the quantitative description of features of yet unknown identity. |
format | Online Article Text |
id | pubmed-8305572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-83055722021-07-25 An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D Häckl, Martina Tauber, Philipp Schweda, Frank Zacharias, Helena U. Altenbuchinger, Michael Oefner, Peter J. Gronwald, Wolfram Metabolites Article NMR spectroscopy is a widely used method for the detection and quantification of metabolites in complex biological fluids. However, the large number of metabolites present in a biological sample such as urine or plasma leads to considerable signal overlap in one-dimensional NMR spectra, which in turn hampers both signal identification and quantification. As a consequence, we have developed an easy to use R-package that allows the fully automated deconvolution of overlapping signals in the underlying Lorentzian line-shapes. We show that precise integral values are computed, which are required to obtain both relative and absolute quantitative information. The algorithm is independent of any knowledge of the corresponding metabolites, which also allows the quantitative description of features of yet unknown identity. MDPI 2021-07-13 /pmc/articles/PMC8305572/ /pubmed/34357346 http://dx.doi.org/10.3390/metabo11070452 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Häckl, Martina Tauber, Philipp Schweda, Frank Zacharias, Helena U. Altenbuchinger, Michael Oefner, Peter J. Gronwald, Wolfram An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D |
title | An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D |
title_full | An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D |
title_fullStr | An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D |
title_full_unstemmed | An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D |
title_short | An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D |
title_sort | r-package for the deconvolution and integration of 1d nmr data: metabodecon1d |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8305572/ https://www.ncbi.nlm.nih.gov/pubmed/34357346 http://dx.doi.org/10.3390/metabo11070452 |
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