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Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study
BACKGROUND: The fidelity and reliability of disease model predictions depend on accurate and precise descriptions of processes and determination of parameters. Various models exist to describe within-host dynamics during malaria infection but there is a shortage of clinical data that can be used to...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8305899/ https://www.ncbi.nlm.nih.gov/pubmed/34303353 http://dx.doi.org/10.1186/s12859-021-04289-z |
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author | Horn, Shade Snoep, Jacky L. van Niekerk , David D. |
author_facet | Horn, Shade Snoep, Jacky L. van Niekerk , David D. |
author_sort | Horn, Shade |
collection | PubMed |
description | BACKGROUND: The fidelity and reliability of disease model predictions depend on accurate and precise descriptions of processes and determination of parameters. Various models exist to describe within-host dynamics during malaria infection but there is a shortage of clinical data that can be used to quantitatively validate them and establish confidence in their predictions. In addition, model parameters often contain a degree of uncertainty and show variations between individuals, potentially undermining the reliability of model predictions. In this study models were reproduced and analysed by means of robustness, uncertainty, local sensitivity and local sensitivity robustness analysis to establish confidence in their predictions. RESULTS: Components of the immune system are responsible for the most uncertainty in model outputs, while disease associated variables showed the greatest sensitivity for these components. All models showed a comparable degree of robustness but displayed different ranges in their predictions. In these different ranges, sensitivities were well-preserved in three of the four models. CONCLUSION: Analyses of the effects of parameter variations in models can provide a comparative tool for the evaluation of model predictions. In addition, it can assist in uncovering model weak points and, in the case of disease models, be used to identify possible points for therapeutic intervention. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-021-04289-z. |
format | Online Article Text |
id | pubmed-8305899 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-83058992021-07-28 Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study Horn, Shade Snoep, Jacky L. van Niekerk , David D. BMC Bioinformatics Research BACKGROUND: The fidelity and reliability of disease model predictions depend on accurate and precise descriptions of processes and determination of parameters. Various models exist to describe within-host dynamics during malaria infection but there is a shortage of clinical data that can be used to quantitatively validate them and establish confidence in their predictions. In addition, model parameters often contain a degree of uncertainty and show variations between individuals, potentially undermining the reliability of model predictions. In this study models were reproduced and analysed by means of robustness, uncertainty, local sensitivity and local sensitivity robustness analysis to establish confidence in their predictions. RESULTS: Components of the immune system are responsible for the most uncertainty in model outputs, while disease associated variables showed the greatest sensitivity for these components. All models showed a comparable degree of robustness but displayed different ranges in their predictions. In these different ranges, sensitivities were well-preserved in three of the four models. CONCLUSION: Analyses of the effects of parameter variations in models can provide a comparative tool for the evaluation of model predictions. In addition, it can assist in uncovering model weak points and, in the case of disease models, be used to identify possible points for therapeutic intervention. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-021-04289-z. BioMed Central 2021-07-24 /pmc/articles/PMC8305899/ /pubmed/34303353 http://dx.doi.org/10.1186/s12859-021-04289-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Horn, Shade Snoep, Jacky L. van Niekerk , David D. Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study |
title | Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study |
title_full | Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study |
title_fullStr | Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study |
title_full_unstemmed | Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study |
title_short | Uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study |
title_sort | uncovering the effects of heterogeneity and parameter sensitivity on within-host dynamics of disease: malaria as a case study |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8305899/ https://www.ncbi.nlm.nih.gov/pubmed/34303353 http://dx.doi.org/10.1186/s12859-021-04289-z |
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