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Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth

While looking for novel insect-associated phages, a unique siphophage, Nocturne116, was isolated from a deceased local moth specimen along with its host, which was identified by 16S rRNA gene sequencing as a strain of Lactococcus lactis. Next-generation sequencing and the subsequent genome annotatio...

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Autores principales: Zrelovs, Nikita, Dislers, Andris, Kazaks, Andris
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8306868/
https://www.ncbi.nlm.nih.gov/pubmed/34361975
http://dx.doi.org/10.3390/microorganisms9071540
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author Zrelovs, Nikita
Dislers, Andris
Kazaks, Andris
author_facet Zrelovs, Nikita
Dislers, Andris
Kazaks, Andris
author_sort Zrelovs, Nikita
collection PubMed
description While looking for novel insect-associated phages, a unique siphophage, Nocturne116, was isolated from a deceased local moth specimen along with its host, which was identified by 16S rRNA gene sequencing as a strain of Lactococcus lactis. Next-generation sequencing and the subsequent genome annotation elaborated on herein revealed that the genome of Nocturne116 is a 25,554 bp long dsDNA molecule with 10 bp long 3′ cos overhangs and a GC content of 37.99%, comprising 52 predicted open reading frames. The complete nucleotide sequence of phage Nocturne116 genome is dissimilar to any of the already sequenced phages, save for a distant link with Lactococcus phage Q54. Functions for only 15/52 of Nocturne116 gene products could be reliably predicted using contemporary comparative genomics approaches, while 22 of its gene products do not yet have any homologous entries in the public biological sequence repositories. Despite the public availability of nearly 350 elucidated Lactococcus phage complete genomes as of now, Nocturne116 firmly stands out as a sole representative of novel phage genus.
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spelling pubmed-83068682021-07-25 Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth Zrelovs, Nikita Dislers, Andris Kazaks, Andris Microorganisms Article While looking for novel insect-associated phages, a unique siphophage, Nocturne116, was isolated from a deceased local moth specimen along with its host, which was identified by 16S rRNA gene sequencing as a strain of Lactococcus lactis. Next-generation sequencing and the subsequent genome annotation elaborated on herein revealed that the genome of Nocturne116 is a 25,554 bp long dsDNA molecule with 10 bp long 3′ cos overhangs and a GC content of 37.99%, comprising 52 predicted open reading frames. The complete nucleotide sequence of phage Nocturne116 genome is dissimilar to any of the already sequenced phages, save for a distant link with Lactococcus phage Q54. Functions for only 15/52 of Nocturne116 gene products could be reliably predicted using contemporary comparative genomics approaches, while 22 of its gene products do not yet have any homologous entries in the public biological sequence repositories. Despite the public availability of nearly 350 elucidated Lactococcus phage complete genomes as of now, Nocturne116 firmly stands out as a sole representative of novel phage genus. MDPI 2021-07-20 /pmc/articles/PMC8306868/ /pubmed/34361975 http://dx.doi.org/10.3390/microorganisms9071540 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zrelovs, Nikita
Dislers, Andris
Kazaks, Andris
Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth
title Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth
title_full Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth
title_fullStr Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth
title_full_unstemmed Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth
title_short Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth
title_sort genome characterization of nocturne116, novel lactococcus lactis-infecting phage isolated from moth
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8306868/
https://www.ncbi.nlm.nih.gov/pubmed/34361975
http://dx.doi.org/10.3390/microorganisms9071540
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