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The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae
Species belonging to the genus Erwinia are predominantly plant pathogens. A number of bacteriophages capable of infecting Erwinia have been used for the control of plant diseases such as fire blight. Public repositories provide the complete genome information for such phages, which includes genomes...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8310351/ https://www.ncbi.nlm.nih.gov/pubmed/34202208 http://dx.doi.org/10.3390/v13071231 |
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author | Kim, Sang Guen Roh, Eunjung Park, Jungkum Giri, Sib Sankar Kwon, Jun Kim, Sang Wha Kang, Jeong Woo Lee, Sung Bin Jung, Won Joon Lee, Young Min Cho, Kevin Park, Se Chang |
author_facet | Kim, Sang Guen Roh, Eunjung Park, Jungkum Giri, Sib Sankar Kwon, Jun Kim, Sang Wha Kang, Jeong Woo Lee, Sung Bin Jung, Won Joon Lee, Young Min Cho, Kevin Park, Se Chang |
author_sort | Kim, Sang Guen |
collection | PubMed |
description | Species belonging to the genus Erwinia are predominantly plant pathogens. A number of bacteriophages capable of infecting Erwinia have been used for the control of plant diseases such as fire blight. Public repositories provide the complete genome information for such phages, which includes genomes ranging from 30 kb to 350 kb in size. However, limited information is available regarding bacteriophages belonging to the family Siphoviridae. A novel lytic siphophage, pEp_SNUABM_08, which specifically infects Erwinia pyrifoliae, was isolated from the soil of an affected apple orchard in South Korea. A comprehensive genome analysis was performed using the Erwinia-infecting siphophage. The whole genome of pEp_SNUABM_08 comprised 62,784 bp (GC content, 57.24%) with 79 open reading frames. The genomic characteristics confirmed that pEp_SNUABM_08 is a singleton lytic bacteriophage belonging to the family Siphoviridae, and no closely related phages have been reported thus far. Our study not only characterized a unique phage, but also provides insight into the genetic diversity of Erwinia bacteriophages. |
format | Online Article Text |
id | pubmed-8310351 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-83103512021-07-25 The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae Kim, Sang Guen Roh, Eunjung Park, Jungkum Giri, Sib Sankar Kwon, Jun Kim, Sang Wha Kang, Jeong Woo Lee, Sung Bin Jung, Won Joon Lee, Young Min Cho, Kevin Park, Se Chang Viruses Article Species belonging to the genus Erwinia are predominantly plant pathogens. A number of bacteriophages capable of infecting Erwinia have been used for the control of plant diseases such as fire blight. Public repositories provide the complete genome information for such phages, which includes genomes ranging from 30 kb to 350 kb in size. However, limited information is available regarding bacteriophages belonging to the family Siphoviridae. A novel lytic siphophage, pEp_SNUABM_08, which specifically infects Erwinia pyrifoliae, was isolated from the soil of an affected apple orchard in South Korea. A comprehensive genome analysis was performed using the Erwinia-infecting siphophage. The whole genome of pEp_SNUABM_08 comprised 62,784 bp (GC content, 57.24%) with 79 open reading frames. The genomic characteristics confirmed that pEp_SNUABM_08 is a singleton lytic bacteriophage belonging to the family Siphoviridae, and no closely related phages have been reported thus far. Our study not only characterized a unique phage, but also provides insight into the genetic diversity of Erwinia bacteriophages. MDPI 2021-06-25 /pmc/articles/PMC8310351/ /pubmed/34202208 http://dx.doi.org/10.3390/v13071231 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kim, Sang Guen Roh, Eunjung Park, Jungkum Giri, Sib Sankar Kwon, Jun Kim, Sang Wha Kang, Jeong Woo Lee, Sung Bin Jung, Won Joon Lee, Young Min Cho, Kevin Park, Se Chang The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae |
title | The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae |
title_full | The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae |
title_fullStr | The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae |
title_full_unstemmed | The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae |
title_short | The Bacteriophage pEp_SNUABM_08 Is a Novel Singleton Siphovirus with High Host Specificity for Erwinia pyrifoliae |
title_sort | bacteriophage pep_snuabm_08 is a novel singleton siphovirus with high host specificity for erwinia pyrifoliae |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8310351/ https://www.ncbi.nlm.nih.gov/pubmed/34202208 http://dx.doi.org/10.3390/v13071231 |
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