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Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer
PURPOSE: We aimed to construct an immune-related long noncoding ribonucleic acids (irlncRNA) signature to evaluate the prognosis of patients without specific expression level of these irlncRNA. METHODS: The raw transcriptome data were downloaded from The Cancer Genome Atlas (TCGA), irlncRNAs were fi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8311739/ https://www.ncbi.nlm.nih.gov/pubmed/34322391 http://dx.doi.org/10.3389/fonc.2021.704946 |
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author | Hua, Shan Xie, Zhiwen Wang, Wenhao Wan, Zhong Chen, Min Zhao, Sheng Jiang, Juntao |
author_facet | Hua, Shan Xie, Zhiwen Wang, Wenhao Wan, Zhong Chen, Min Zhao, Sheng Jiang, Juntao |
author_sort | Hua, Shan |
collection | PubMed |
description | PURPOSE: We aimed to construct an immune-related long noncoding ribonucleic acids (irlncRNA) signature to evaluate the prognosis of patients without specific expression level of these irlncRNA. METHODS: The raw transcriptome data were downloaded from The Cancer Genome Atlas (TCGA), irlncRNAs were filtered out using an online immune related gene database and coexpression analysis, differently expressed irlncRNA (DEirlncRNA) pairs were identified by univariate analysis. The areas under curve (AUC) were compared and the Akaike information criterion (AIC) values of receiver operating curve (ROC) was counted, the most optimal model was constructed to divide bladder cancer patients into high- and low-risk groups usingõ the cut-off point of ROC. Then, we evaluated them from multiple perspectives, such as survival time, clinic-pathological characteristics, immune-related cells infiltrating, chemotherapeutics efficacy and immune checkpoint inhibitors. RESULTS: 14 DEirlncRNA pairs were included in this signature. Patients in high-risk groups demonstrated apparent shorter survival time, more aggressive clinic-pathological characteristics, different immune-related cells infiltrating status, lower chemotherapeutics efficacy. CONCLUSION: The irlncRNA signature demonstrated a promising prediction value for bladder cancer patients and was important in guiding clinical treatment. |
format | Online Article Text |
id | pubmed-8311739 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83117392021-07-27 Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer Hua, Shan Xie, Zhiwen Wang, Wenhao Wan, Zhong Chen, Min Zhao, Sheng Jiang, Juntao Front Oncol Oncology PURPOSE: We aimed to construct an immune-related long noncoding ribonucleic acids (irlncRNA) signature to evaluate the prognosis of patients without specific expression level of these irlncRNA. METHODS: The raw transcriptome data were downloaded from The Cancer Genome Atlas (TCGA), irlncRNAs were filtered out using an online immune related gene database and coexpression analysis, differently expressed irlncRNA (DEirlncRNA) pairs were identified by univariate analysis. The areas under curve (AUC) were compared and the Akaike information criterion (AIC) values of receiver operating curve (ROC) was counted, the most optimal model was constructed to divide bladder cancer patients into high- and low-risk groups usingõ the cut-off point of ROC. Then, we evaluated them from multiple perspectives, such as survival time, clinic-pathological characteristics, immune-related cells infiltrating, chemotherapeutics efficacy and immune checkpoint inhibitors. RESULTS: 14 DEirlncRNA pairs were included in this signature. Patients in high-risk groups demonstrated apparent shorter survival time, more aggressive clinic-pathological characteristics, different immune-related cells infiltrating status, lower chemotherapeutics efficacy. CONCLUSION: The irlncRNA signature demonstrated a promising prediction value for bladder cancer patients and was important in guiding clinical treatment. Frontiers Media S.A. 2021-07-12 /pmc/articles/PMC8311739/ /pubmed/34322391 http://dx.doi.org/10.3389/fonc.2021.704946 Text en Copyright © 2021 Hua, Xie, Wang, Wan, Chen, Zhao and Jiang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Hua, Shan Xie, Zhiwen Wang, Wenhao Wan, Zhong Chen, Min Zhao, Sheng Jiang, Juntao Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer |
title | Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer |
title_full | Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer |
title_fullStr | Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer |
title_full_unstemmed | Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer |
title_short | Identification and Validation of a Novel Immune-Related lncRNA Signature for Bladder Cancer |
title_sort | identification and validation of a novel immune-related lncrna signature for bladder cancer |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8311739/ https://www.ncbi.nlm.nih.gov/pubmed/34322391 http://dx.doi.org/10.3389/fonc.2021.704946 |
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