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Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma
The deregulation of fatty acid metabolism plays a crucial role in cancer. However, the prognostic value of genes involved in the metabolism in hepatocellular carcinoma (HCC) remains largely unknown. We first constructed a multi-fatty acid metabolic gene prognostic model of HCC based on The Cancer Ge...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8312438/ https://www.ncbi.nlm.nih.gov/pubmed/34257161 http://dx.doi.org/10.18632/aging.203288 |
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author | He, Dongsheng Cai, Lifang Huang, Weiming Weng, Qingqing Lin, Xi You, Mengxing Liao, Shengyin |
author_facet | He, Dongsheng Cai, Lifang Huang, Weiming Weng, Qingqing Lin, Xi You, Mengxing Liao, Shengyin |
author_sort | He, Dongsheng |
collection | PubMed |
description | The deregulation of fatty acid metabolism plays a crucial role in cancer. However, the prognostic value of genes involved in the metabolism in hepatocellular carcinoma (HCC) remains largely unknown. We first constructed a multi-fatty acid metabolic gene prognostic model of HCC based on The Cancer Genome Atlas (TCGA) and further validated it using the International Cancer Genome Consortium (ICGC) database. The model was integrated with the clinical parameters, and a nomogram was built and weighted. Moreover, immune cell infiltration of the tumor microenvironment was investigated. A prognostic model was constructed using 6 selected fatty acid metabolism-related genes, and HCC patients were divided into high- and low-risk groups. Receiver operating characteristic curve (ROC) analysis, principal component analysis (PCA), and t-distributed stochastic neighbor embedding (t-SNE) analysis showed the optimal performance of the model. The concordance index (C-index), ROC curve, calibration plot and decision curve analysis (DCA) all confirmed the satisfactory predictive capacity of the nomogram. The analysis of immune cell infiltration in HCC patients revealed a correlation with different risk levels. Our findings indicate that a prognostic model based on fatty acid metabolism-related genes has superior predictive capacities, which provides the possibility for further improving the individualized treatment of patients with HCC. |
format | Online Article Text |
id | pubmed-8312438 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-83124382021-07-27 Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma He, Dongsheng Cai, Lifang Huang, Weiming Weng, Qingqing Lin, Xi You, Mengxing Liao, Shengyin Aging (Albany NY) Research Paper The deregulation of fatty acid metabolism plays a crucial role in cancer. However, the prognostic value of genes involved in the metabolism in hepatocellular carcinoma (HCC) remains largely unknown. We first constructed a multi-fatty acid metabolic gene prognostic model of HCC based on The Cancer Genome Atlas (TCGA) and further validated it using the International Cancer Genome Consortium (ICGC) database. The model was integrated with the clinical parameters, and a nomogram was built and weighted. Moreover, immune cell infiltration of the tumor microenvironment was investigated. A prognostic model was constructed using 6 selected fatty acid metabolism-related genes, and HCC patients were divided into high- and low-risk groups. Receiver operating characteristic curve (ROC) analysis, principal component analysis (PCA), and t-distributed stochastic neighbor embedding (t-SNE) analysis showed the optimal performance of the model. The concordance index (C-index), ROC curve, calibration plot and decision curve analysis (DCA) all confirmed the satisfactory predictive capacity of the nomogram. The analysis of immune cell infiltration in HCC patients revealed a correlation with different risk levels. Our findings indicate that a prognostic model based on fatty acid metabolism-related genes has superior predictive capacities, which provides the possibility for further improving the individualized treatment of patients with HCC. Impact Journals 2021-07-13 /pmc/articles/PMC8312438/ /pubmed/34257161 http://dx.doi.org/10.18632/aging.203288 Text en Copyright: © 2021 He et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper He, Dongsheng Cai, Lifang Huang, Weiming Weng, Qingqing Lin, Xi You, Mengxing Liao, Shengyin Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma |
title | Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma |
title_full | Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma |
title_fullStr | Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma |
title_full_unstemmed | Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma |
title_short | Prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma |
title_sort | prognostic value of fatty acid metabolism-related genes in patients with hepatocellular carcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8312438/ https://www.ncbi.nlm.nih.gov/pubmed/34257161 http://dx.doi.org/10.18632/aging.203288 |
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