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Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data

We are witnessing the dramatic consequences of the COVID-19 pandemic which, unfortunately, go beyond the impact on the health system. Until herd immunity is achieved with vaccines, the only available mechanisms for controlling the pandemic are quarantines, perimeter closures and social distancing wi...

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Autores principales: García-Cremades, Santi, Morales-García, Juan, Hernández-Sanjaime, Rocío, Martínez-España, Raquel, Bueno-Crespo, Andrés, Hernández-Orallo, Enrique, López-Espín, José J., Cecilia, José M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8313557/
https://www.ncbi.nlm.nih.gov/pubmed/34312455
http://dx.doi.org/10.1038/s41598-021-94696-2
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author García-Cremades, Santi
Morales-García, Juan
Hernández-Sanjaime, Rocío
Martínez-España, Raquel
Bueno-Crespo, Andrés
Hernández-Orallo, Enrique
López-Espín, José J.
Cecilia, José M.
author_facet García-Cremades, Santi
Morales-García, Juan
Hernández-Sanjaime, Rocío
Martínez-España, Raquel
Bueno-Crespo, Andrés
Hernández-Orallo, Enrique
López-Espín, José J.
Cecilia, José M.
author_sort García-Cremades, Santi
collection PubMed
description We are witnessing the dramatic consequences of the COVID-19 pandemic which, unfortunately, go beyond the impact on the health system. Until herd immunity is achieved with vaccines, the only available mechanisms for controlling the pandemic are quarantines, perimeter closures and social distancing with the aim of reducing mobility. Governments only apply these measures for a reduced period, since they involve the closure of economic activities such as tourism, cultural activities, or nightlife. The main criterion for establishing these measures and planning socioeconomic subsidies is the evolution of infections. However, the collapse of the health system and the unpredictability of human behavior, among others, make it difficult to predict this evolution in the short to medium term. This article evaluates different models for the early prediction of the evolution of the COVID-19 pandemic to create a decision support system for policy-makers. We consider a wide branch of models including artificial neural networks such as LSTM and GRU and statistically based models such as autoregressive (AR) or ARIMA. Moreover, several consensus strategies to ensemble all models into one system are proposed to obtain better results in this uncertain environment. Finally, a multivariate model that includes mobility data provided by Google is proposed to better forecast trend changes in the 14-day CI. A real case study in Spain is evaluated, providing very accurate results for the prediction of 14-day CI in scenarios with and without trend changes, reaching 0.93 [Formula: see text] , 4.16 RMSE and 1.08 MAE.
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spelling pubmed-83135572021-07-28 Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data García-Cremades, Santi Morales-García, Juan Hernández-Sanjaime, Rocío Martínez-España, Raquel Bueno-Crespo, Andrés Hernández-Orallo, Enrique López-Espín, José J. Cecilia, José M. Sci Rep Article We are witnessing the dramatic consequences of the COVID-19 pandemic which, unfortunately, go beyond the impact on the health system. Until herd immunity is achieved with vaccines, the only available mechanisms for controlling the pandemic are quarantines, perimeter closures and social distancing with the aim of reducing mobility. Governments only apply these measures for a reduced period, since they involve the closure of economic activities such as tourism, cultural activities, or nightlife. The main criterion for establishing these measures and planning socioeconomic subsidies is the evolution of infections. However, the collapse of the health system and the unpredictability of human behavior, among others, make it difficult to predict this evolution in the short to medium term. This article evaluates different models for the early prediction of the evolution of the COVID-19 pandemic to create a decision support system for policy-makers. We consider a wide branch of models including artificial neural networks such as LSTM and GRU and statistically based models such as autoregressive (AR) or ARIMA. Moreover, several consensus strategies to ensemble all models into one system are proposed to obtain better results in this uncertain environment. Finally, a multivariate model that includes mobility data provided by Google is proposed to better forecast trend changes in the 14-day CI. A real case study in Spain is evaluated, providing very accurate results for the prediction of 14-day CI in scenarios with and without trend changes, reaching 0.93 [Formula: see text] , 4.16 RMSE and 1.08 MAE. Nature Publishing Group UK 2021-07-26 /pmc/articles/PMC8313557/ /pubmed/34312455 http://dx.doi.org/10.1038/s41598-021-94696-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
García-Cremades, Santi
Morales-García, Juan
Hernández-Sanjaime, Rocío
Martínez-España, Raquel
Bueno-Crespo, Andrés
Hernández-Orallo, Enrique
López-Espín, José J.
Cecilia, José M.
Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
title Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
title_full Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
title_fullStr Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
title_full_unstemmed Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
title_short Improving prediction of COVID-19 evolution by fusing epidemiological and mobility data
title_sort improving prediction of covid-19 evolution by fusing epidemiological and mobility data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8313557/
https://www.ncbi.nlm.nih.gov/pubmed/34312455
http://dx.doi.org/10.1038/s41598-021-94696-2
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