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Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
We present Raptor, a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) a...
| Autores principales: | , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Elsevier
2021
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8313605/ https://www.ncbi.nlm.nih.gov/pubmed/34337360 http://dx.doi.org/10.1016/j.isci.2021.102782 |