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Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region

Polyhydroxyalkanoate (PHA) is stored as an important carbon and energy source in bacterial cells. For biomedical applications, gram-positive bacteria can be better sources of PHAs, since they lack outer membrane lipopolysaccharide. Although gram-positive Streptomyces coelicolor A3(2) has been indica...

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Autores principales: DEMİR ÖKSÜZ, Zeynep, DORUK, Tuğrul, YAĞCI, Nevin, TUNCA GEDİK, Sedef
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Scientific and Technological Research Council of Turkey 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8313934/
https://www.ncbi.nlm.nih.gov/pubmed/34377052
http://dx.doi.org/10.3906/biy-2011-16
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author DEMİR ÖKSÜZ, Zeynep
DORUK, Tuğrul
YAĞCI, Nevin
TUNCA GEDİK, Sedef
author_facet DEMİR ÖKSÜZ, Zeynep
DORUK, Tuğrul
YAĞCI, Nevin
TUNCA GEDİK, Sedef
author_sort DEMİR ÖKSÜZ, Zeynep
collection PubMed
description Polyhydroxyalkanoate (PHA) is stored as an important carbon and energy source in bacterial cells. For biomedical applications, gram-positive bacteria can be better sources of PHAs, since they lack outer membrane lipopolysaccharide. Although gram-positive Streptomyces coelicolor A3(2) has been indicated as a high potential PHA producer, pha C gene that encodes the key enzyme PHA synthase in the metabolic pathway is not determined in its genome. BLAST search results of the GenBank database argued that SCO7613 could specify a putative polyhydroxyalkanoate synthase (PhaC) responsible for PHA biosynthesis. Deduced amino acid sequence of SCO7613 showed the presence of conserved lipase box like sequence, (555)GASAG(559), in which serine residue was present as the active nucleophile. Present study describes deletion of putative S. coelicolor pha C gene via PCR dependent method. We showed that SCO7613 is not an essential gene in S. coelicolor and its deletion affected PHA accumulation negatively although it is not ceased. Transcomplementation abolished the mutant phenotype, demonstrating that the decrease in PHA resulted from the deletion of SCO7613.
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spelling pubmed-83139342021-08-09 Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region DEMİR ÖKSÜZ, Zeynep DORUK, Tuğrul YAĞCI, Nevin TUNCA GEDİK, Sedef Turk J Biol Article Polyhydroxyalkanoate (PHA) is stored as an important carbon and energy source in bacterial cells. For biomedical applications, gram-positive bacteria can be better sources of PHAs, since they lack outer membrane lipopolysaccharide. Although gram-positive Streptomyces coelicolor A3(2) has been indicated as a high potential PHA producer, pha C gene that encodes the key enzyme PHA synthase in the metabolic pathway is not determined in its genome. BLAST search results of the GenBank database argued that SCO7613 could specify a putative polyhydroxyalkanoate synthase (PhaC) responsible for PHA biosynthesis. Deduced amino acid sequence of SCO7613 showed the presence of conserved lipase box like sequence, (555)GASAG(559), in which serine residue was present as the active nucleophile. Present study describes deletion of putative S. coelicolor pha C gene via PCR dependent method. We showed that SCO7613 is not an essential gene in S. coelicolor and its deletion affected PHA accumulation negatively although it is not ceased. Transcomplementation abolished the mutant phenotype, demonstrating that the decrease in PHA resulted from the deletion of SCO7613. The Scientific and Technological Research Council of Turkey 2021-06-23 /pmc/articles/PMC8313934/ /pubmed/34377052 http://dx.doi.org/10.3906/biy-2011-16 Text en Copyright © 2021 The Author(s) https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Article
DEMİR ÖKSÜZ, Zeynep
DORUK, Tuğrul
YAĞCI, Nevin
TUNCA GEDİK, Sedef
Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region
title Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region
title_full Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region
title_fullStr Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region
title_full_unstemmed Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region
title_short Polyhydroxyalkanoate accumulation in Streptomyces coelicolor affected by SCO7613 gene region
title_sort polyhydroxyalkanoate accumulation in streptomyces coelicolor affected by sco7613 gene region
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8313934/
https://www.ncbi.nlm.nih.gov/pubmed/34377052
http://dx.doi.org/10.3906/biy-2011-16
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AT yagcinevin polyhydroxyalkanoateaccumulationinstreptomycescoelicoloraffectedbysco7613generegion
AT tuncagediksedef polyhydroxyalkanoateaccumulationinstreptomycescoelicoloraffectedbysco7613generegion