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Whole genome resequencing data sets of different species from Pistacia genus

OBJECTIVES: Pistacia genus belongs to the flowering plants in the cashew family and contains at least 11 species. The whole-genome resequencing data of different species from Pistacia genus are described herein. The data reported here will be useful for better understand the adaptive evolution, demo...

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Autores principales: Tajabadi, Ali, Esmailizadeh, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8314588/
https://www.ncbi.nlm.nih.gov/pubmed/34315525
http://dx.doi.org/10.1186/s13104-021-05702-9
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author Tajabadi, Ali
Esmailizadeh, Ali
author_facet Tajabadi, Ali
Esmailizadeh, Ali
author_sort Tajabadi, Ali
collection PubMed
description OBJECTIVES: Pistacia genus belongs to the flowering plants in the cashew family and contains at least 11 species. The whole-genome resequencing data of different species from Pistacia genus are described herein. The data reported here will be useful for better understand the adaptive evolution, demographic history, genetic diversity, population structure, and domestication of pistachio. DATA DESCRIPTION: Genomic DNA was isolated from fresh leaves and used to construct libraries with insert size of 350 bp. Sequence libraries were made and sequenced on the Illumina Hiseq 4000 platform to produce 150 bp paired-end reads. A total number of 4,851,118,730 billion reads (ranging from 33,305,900 to 34,990,618 reads per sample) were created across all samples. We produced a total of 727.67 Gbp data which have been deposited in the Genome Sequence Archive (GSA) database with the Accession of CRA000978. All of the data are also available as the sequence read archive (SRA) format in the National Center for Biotechnology Information (NCBI) with identifier of SRP189222, mirroring our deposited data in GSA.
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spelling pubmed-83145882021-07-28 Whole genome resequencing data sets of different species from Pistacia genus Tajabadi, Ali Esmailizadeh, Ali BMC Res Notes Data Note OBJECTIVES: Pistacia genus belongs to the flowering plants in the cashew family and contains at least 11 species. The whole-genome resequencing data of different species from Pistacia genus are described herein. The data reported here will be useful for better understand the adaptive evolution, demographic history, genetic diversity, population structure, and domestication of pistachio. DATA DESCRIPTION: Genomic DNA was isolated from fresh leaves and used to construct libraries with insert size of 350 bp. Sequence libraries were made and sequenced on the Illumina Hiseq 4000 platform to produce 150 bp paired-end reads. A total number of 4,851,118,730 billion reads (ranging from 33,305,900 to 34,990,618 reads per sample) were created across all samples. We produced a total of 727.67 Gbp data which have been deposited in the Genome Sequence Archive (GSA) database with the Accession of CRA000978. All of the data are also available as the sequence read archive (SRA) format in the National Center for Biotechnology Information (NCBI) with identifier of SRP189222, mirroring our deposited data in GSA. BioMed Central 2021-07-27 /pmc/articles/PMC8314588/ /pubmed/34315525 http://dx.doi.org/10.1186/s13104-021-05702-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Tajabadi, Ali
Esmailizadeh, Ali
Whole genome resequencing data sets of different species from Pistacia genus
title Whole genome resequencing data sets of different species from Pistacia genus
title_full Whole genome resequencing data sets of different species from Pistacia genus
title_fullStr Whole genome resequencing data sets of different species from Pistacia genus
title_full_unstemmed Whole genome resequencing data sets of different species from Pistacia genus
title_short Whole genome resequencing data sets of different species from Pistacia genus
title_sort whole genome resequencing data sets of different species from pistacia genus
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8314588/
https://www.ncbi.nlm.nih.gov/pubmed/34315525
http://dx.doi.org/10.1186/s13104-021-05702-9
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