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Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil

The outbreak of COVID-19 in 2020 has led to a surge in interest in the mathematical modeling of infectious diseases. Such models are usually defined as compartmental models, in which the population under study is divided into compartments based on qualitative characteristics, with different assumpti...

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Autores principales: Grave, Malú, Viguerie, Alex, Barros, Gabriel F., Reali, Alessandro, Coutinho, Alvaro L. G. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8315263/
https://www.ncbi.nlm.nih.gov/pubmed/34335018
http://dx.doi.org/10.1007/s11831-021-09627-1
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author Grave, Malú
Viguerie, Alex
Barros, Gabriel F.
Reali, Alessandro
Coutinho, Alvaro L. G. A.
author_facet Grave, Malú
Viguerie, Alex
Barros, Gabriel F.
Reali, Alessandro
Coutinho, Alvaro L. G. A.
author_sort Grave, Malú
collection PubMed
description The outbreak of COVID-19 in 2020 has led to a surge in interest in the mathematical modeling of infectious diseases. Such models are usually defined as compartmental models, in which the population under study is divided into compartments based on qualitative characteristics, with different assumptions about the nature and rate of transfer across compartments. Though most commonly formulated as ordinary differential equation models, in which the compartments depend only on time, recent works have also focused on partial differential equation (PDE) models, incorporating the variation of an epidemic in space. Such research on PDE models within a Susceptible, Infected, Exposed, Recovered, and Deceased framework has led to promising results in reproducing COVID-19 contagion dynamics. In this paper, we assess the robustness of this modeling framework by considering different geometries over more extended periods than in other similar studies. We first validate our code by reproducing previously shown results for Lombardy, Italy. We then focus on the U.S. state of Georgia and on the Brazilian state of Rio de Janeiro, one of the most impacted areas in the world. Our results show good agreement with real-world epidemiological data in both time and space for all regions across major areas and across three different continents, suggesting that the modeling approach is both valid and robust.
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spelling pubmed-83152632021-07-28 Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil Grave, Malú Viguerie, Alex Barros, Gabriel F. Reali, Alessandro Coutinho, Alvaro L. G. A. Arch Comput Methods Eng S.I. : Modeling and Simulation of Infectious Diseases The outbreak of COVID-19 in 2020 has led to a surge in interest in the mathematical modeling of infectious diseases. Such models are usually defined as compartmental models, in which the population under study is divided into compartments based on qualitative characteristics, with different assumptions about the nature and rate of transfer across compartments. Though most commonly formulated as ordinary differential equation models, in which the compartments depend only on time, recent works have also focused on partial differential equation (PDE) models, incorporating the variation of an epidemic in space. Such research on PDE models within a Susceptible, Infected, Exposed, Recovered, and Deceased framework has led to promising results in reproducing COVID-19 contagion dynamics. In this paper, we assess the robustness of this modeling framework by considering different geometries over more extended periods than in other similar studies. We first validate our code by reproducing previously shown results for Lombardy, Italy. We then focus on the U.S. state of Georgia and on the Brazilian state of Rio de Janeiro, one of the most impacted areas in the world. Our results show good agreement with real-world epidemiological data in both time and space for all regions across major areas and across three different continents, suggesting that the modeling approach is both valid and robust. Springer Netherlands 2021-07-27 2021 /pmc/articles/PMC8315263/ /pubmed/34335018 http://dx.doi.org/10.1007/s11831-021-09627-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle S.I. : Modeling and Simulation of Infectious Diseases
Grave, Malú
Viguerie, Alex
Barros, Gabriel F.
Reali, Alessandro
Coutinho, Alvaro L. G. A.
Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil
title Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil
title_full Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil
title_fullStr Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil
title_full_unstemmed Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil
title_short Assessing the Spatio-temporal Spread of COVID-19 via Compartmental Models with Diffusion in Italy, USA, and Brazil
title_sort assessing the spatio-temporal spread of covid-19 via compartmental models with diffusion in italy, usa, and brazil
topic S.I. : Modeling and Simulation of Infectious Diseases
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8315263/
https://www.ncbi.nlm.nih.gov/pubmed/34335018
http://dx.doi.org/10.1007/s11831-021-09627-1
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