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Author response to Cunha et al

The need to identify biomarkers to predict immunotherapy response for rare cancers has been long overdue. We aimed to study this in our paper, ‘Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers’. In this response to the Letter to the Editor by Cunha et a...

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Autores principales: Colen, Rivka R, Rolfo, Christian, Ak, Murat, Ayoub, Mira, Ahmed, Sara, Elshafeey, Nabil, Mamindla, Priyadarshini, Zinn, Pascal O, Ng, Chaan, Vikram, Raghu, Bakas, Spyridon, Peterson, Christine B, Rodon Ahnert, Jordi, Subbiah, Vivek, Karp, Daniel D, Stephen, Bettzy, Hajjar, Joud, Naing, Aung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317086/
https://www.ncbi.nlm.nih.gov/pubmed/34315823
http://dx.doi.org/10.1136/jitc-2021-003299
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author Colen, Rivka R
Rolfo, Christian
Ak, Murat
Ayoub, Mira
Ahmed, Sara
Elshafeey, Nabil
Mamindla, Priyadarshini
Zinn, Pascal O
Ng, Chaan
Vikram, Raghu
Bakas, Spyridon
Peterson, Christine B
Rodon Ahnert, Jordi
Subbiah, Vivek
Karp, Daniel D
Stephen, Bettzy
Hajjar, Joud
Naing, Aung
author_facet Colen, Rivka R
Rolfo, Christian
Ak, Murat
Ayoub, Mira
Ahmed, Sara
Elshafeey, Nabil
Mamindla, Priyadarshini
Zinn, Pascal O
Ng, Chaan
Vikram, Raghu
Bakas, Spyridon
Peterson, Christine B
Rodon Ahnert, Jordi
Subbiah, Vivek
Karp, Daniel D
Stephen, Bettzy
Hajjar, Joud
Naing, Aung
author_sort Colen, Rivka R
collection PubMed
description The need to identify biomarkers to predict immunotherapy response for rare cancers has been long overdue. We aimed to study this in our paper, ‘Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers’. In this response to the Letter to the Editor by Cunha et al, we explain and discuss the reasons behind choosing LASSO (Least Absolute Shrinkage and Selection Operator) and XGBoost (eXtreme Gradient Boosting) with LOOCV (Leave-One-Out Cross-Validation) as the feature selection and classifier method, respectively for our radiomics models. Also, we highlight what care was taken to avoid any overfitting on the models. Further, we checked for the multicollinearity of the features. Additionally, we performed 10-fold cross-validation instead of LOOCV to see the predictive performance of our radiomics models.
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spelling pubmed-83170862021-08-13 Author response to Cunha et al Colen, Rivka R Rolfo, Christian Ak, Murat Ayoub, Mira Ahmed, Sara Elshafeey, Nabil Mamindla, Priyadarshini Zinn, Pascal O Ng, Chaan Vikram, Raghu Bakas, Spyridon Peterson, Christine B Rodon Ahnert, Jordi Subbiah, Vivek Karp, Daniel D Stephen, Bettzy Hajjar, Joud Naing, Aung J Immunother Cancer Commentary The need to identify biomarkers to predict immunotherapy response for rare cancers has been long overdue. We aimed to study this in our paper, ‘Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers’. In this response to the Letter to the Editor by Cunha et al, we explain and discuss the reasons behind choosing LASSO (Least Absolute Shrinkage and Selection Operator) and XGBoost (eXtreme Gradient Boosting) with LOOCV (Leave-One-Out Cross-Validation) as the feature selection and classifier method, respectively for our radiomics models. Also, we highlight what care was taken to avoid any overfitting on the models. Further, we checked for the multicollinearity of the features. Additionally, we performed 10-fold cross-validation instead of LOOCV to see the predictive performance of our radiomics models. BMJ Publishing Group 2021-07-27 /pmc/articles/PMC8317086/ /pubmed/34315823 http://dx.doi.org/10.1136/jitc-2021-003299 Text en © Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) .
spellingShingle Commentary
Colen, Rivka R
Rolfo, Christian
Ak, Murat
Ayoub, Mira
Ahmed, Sara
Elshafeey, Nabil
Mamindla, Priyadarshini
Zinn, Pascal O
Ng, Chaan
Vikram, Raghu
Bakas, Spyridon
Peterson, Christine B
Rodon Ahnert, Jordi
Subbiah, Vivek
Karp, Daniel D
Stephen, Bettzy
Hajjar, Joud
Naing, Aung
Author response to Cunha et al
title Author response to Cunha et al
title_full Author response to Cunha et al
title_fullStr Author response to Cunha et al
title_full_unstemmed Author response to Cunha et al
title_short Author response to Cunha et al
title_sort author response to cunha et al
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317086/
https://www.ncbi.nlm.nih.gov/pubmed/34315823
http://dx.doi.org/10.1136/jitc-2021-003299
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