Cargando…
Author response to Cunha et al
The need to identify biomarkers to predict immunotherapy response for rare cancers has been long overdue. We aimed to study this in our paper, ‘Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers’. In this response to the Letter to the Editor by Cunha et a...
Autores principales: | , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BMJ Publishing Group
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317086/ https://www.ncbi.nlm.nih.gov/pubmed/34315823 http://dx.doi.org/10.1136/jitc-2021-003299 |
_version_ | 1783730001505419264 |
---|---|
author | Colen, Rivka R Rolfo, Christian Ak, Murat Ayoub, Mira Ahmed, Sara Elshafeey, Nabil Mamindla, Priyadarshini Zinn, Pascal O Ng, Chaan Vikram, Raghu Bakas, Spyridon Peterson, Christine B Rodon Ahnert, Jordi Subbiah, Vivek Karp, Daniel D Stephen, Bettzy Hajjar, Joud Naing, Aung |
author_facet | Colen, Rivka R Rolfo, Christian Ak, Murat Ayoub, Mira Ahmed, Sara Elshafeey, Nabil Mamindla, Priyadarshini Zinn, Pascal O Ng, Chaan Vikram, Raghu Bakas, Spyridon Peterson, Christine B Rodon Ahnert, Jordi Subbiah, Vivek Karp, Daniel D Stephen, Bettzy Hajjar, Joud Naing, Aung |
author_sort | Colen, Rivka R |
collection | PubMed |
description | The need to identify biomarkers to predict immunotherapy response for rare cancers has been long overdue. We aimed to study this in our paper, ‘Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers’. In this response to the Letter to the Editor by Cunha et al, we explain and discuss the reasons behind choosing LASSO (Least Absolute Shrinkage and Selection Operator) and XGBoost (eXtreme Gradient Boosting) with LOOCV (Leave-One-Out Cross-Validation) as the feature selection and classifier method, respectively for our radiomics models. Also, we highlight what care was taken to avoid any overfitting on the models. Further, we checked for the multicollinearity of the features. Additionally, we performed 10-fold cross-validation instead of LOOCV to see the predictive performance of our radiomics models. |
format | Online Article Text |
id | pubmed-8317086 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BMJ Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-83170862021-08-13 Author response to Cunha et al Colen, Rivka R Rolfo, Christian Ak, Murat Ayoub, Mira Ahmed, Sara Elshafeey, Nabil Mamindla, Priyadarshini Zinn, Pascal O Ng, Chaan Vikram, Raghu Bakas, Spyridon Peterson, Christine B Rodon Ahnert, Jordi Subbiah, Vivek Karp, Daniel D Stephen, Bettzy Hajjar, Joud Naing, Aung J Immunother Cancer Commentary The need to identify biomarkers to predict immunotherapy response for rare cancers has been long overdue. We aimed to study this in our paper, ‘Radiomics analysis for predicting pembrolizumab response in patients with advanced rare cancers’. In this response to the Letter to the Editor by Cunha et al, we explain and discuss the reasons behind choosing LASSO (Least Absolute Shrinkage and Selection Operator) and XGBoost (eXtreme Gradient Boosting) with LOOCV (Leave-One-Out Cross-Validation) as the feature selection and classifier method, respectively for our radiomics models. Also, we highlight what care was taken to avoid any overfitting on the models. Further, we checked for the multicollinearity of the features. Additionally, we performed 10-fold cross-validation instead of LOOCV to see the predictive performance of our radiomics models. BMJ Publishing Group 2021-07-27 /pmc/articles/PMC8317086/ /pubmed/34315823 http://dx.doi.org/10.1136/jitc-2021-003299 Text en © Author(s) (or their employer(s)) 2021. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) . |
spellingShingle | Commentary Colen, Rivka R Rolfo, Christian Ak, Murat Ayoub, Mira Ahmed, Sara Elshafeey, Nabil Mamindla, Priyadarshini Zinn, Pascal O Ng, Chaan Vikram, Raghu Bakas, Spyridon Peterson, Christine B Rodon Ahnert, Jordi Subbiah, Vivek Karp, Daniel D Stephen, Bettzy Hajjar, Joud Naing, Aung Author response to Cunha et al |
title | Author response to Cunha et al |
title_full | Author response to Cunha et al |
title_fullStr | Author response to Cunha et al |
title_full_unstemmed | Author response to Cunha et al |
title_short | Author response to Cunha et al |
title_sort | author response to cunha et al |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317086/ https://www.ncbi.nlm.nih.gov/pubmed/34315823 http://dx.doi.org/10.1136/jitc-2021-003299 |
work_keys_str_mv | AT colenrivkar authorresponsetocunhaetal AT rolfochristian authorresponsetocunhaetal AT akmurat authorresponsetocunhaetal AT ayoubmira authorresponsetocunhaetal AT ahmedsara authorresponsetocunhaetal AT elshafeeynabil authorresponsetocunhaetal AT mamindlapriyadarshini authorresponsetocunhaetal AT zinnpascalo authorresponsetocunhaetal AT ngchaan authorresponsetocunhaetal AT vikramraghu authorresponsetocunhaetal AT bakasspyridon authorresponsetocunhaetal AT petersonchristineb authorresponsetocunhaetal AT rodonahnertjordi authorresponsetocunhaetal AT subbiahvivek authorresponsetocunhaetal AT karpdanield authorresponsetocunhaetal AT stephenbettzy authorresponsetocunhaetal AT hajjarjoud authorresponsetocunhaetal AT naingaung authorresponsetocunhaetal |