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Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism

[Image: see text] While biological crystallization processes have been studied on the microscale extensively, there is a general lack of models addressing the mesoscale aspects of such phenomena. In this work, we investigate whether the phase-field theory developed in materials’ science for describi...

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Autores principales: Gránásy, László, Rátkai, László, Tóth, Gyula I., Gilbert, Pupa U. P. A., Zlotnikov, Igor, Pusztai, Tamás
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317440/
https://www.ncbi.nlm.nih.gov/pubmed/34337606
http://dx.doi.org/10.1021/jacsau.1c00026
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author Gránásy, László
Rátkai, László
Tóth, Gyula I.
Gilbert, Pupa U. P. A.
Zlotnikov, Igor
Pusztai, Tamás
author_facet Gránásy, László
Rátkai, László
Tóth, Gyula I.
Gilbert, Pupa U. P. A.
Zlotnikov, Igor
Pusztai, Tamás
author_sort Gránásy, László
collection PubMed
description [Image: see text] While biological crystallization processes have been studied on the microscale extensively, there is a general lack of models addressing the mesoscale aspects of such phenomena. In this work, we investigate whether the phase-field theory developed in materials’ science for describing complex polycrystalline structures on the mesoscale can be meaningfully adapted to model crystallization in biological systems. We demonstrate the abilities of the phase-field technique by modeling a range of microstructures observed in mollusk shells and coral skeletons, including granular, prismatic, sheet/columnar nacre, and sprinkled spherulitic structures. We also compare two possible micromechanisms of calcification: the classical route, via ion-by-ion addition from a fluid state, and a nonclassical route, crystallization of an amorphous precursor deposited at the solidification front. We show that with an appropriate choice of the model parameters, microstructures similar to those found in biomineralized systems can be obtained along both routes, though the time-scale of the nonclassical route appears to be more realistic. The resemblance of the simulated and natural biominerals suggests that, underneath the immense biological complexity observed in living organisms, the underlying design principles for biological structures may be understood with simple math and simulated by phase-field theory.
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spelling pubmed-83174402021-07-28 Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism Gránásy, László Rátkai, László Tóth, Gyula I. Gilbert, Pupa U. P. A. Zlotnikov, Igor Pusztai, Tamás JACS Au [Image: see text] While biological crystallization processes have been studied on the microscale extensively, there is a general lack of models addressing the mesoscale aspects of such phenomena. In this work, we investigate whether the phase-field theory developed in materials’ science for describing complex polycrystalline structures on the mesoscale can be meaningfully adapted to model crystallization in biological systems. We demonstrate the abilities of the phase-field technique by modeling a range of microstructures observed in mollusk shells and coral skeletons, including granular, prismatic, sheet/columnar nacre, and sprinkled spherulitic structures. We also compare two possible micromechanisms of calcification: the classical route, via ion-by-ion addition from a fluid state, and a nonclassical route, crystallization of an amorphous precursor deposited at the solidification front. We show that with an appropriate choice of the model parameters, microstructures similar to those found in biomineralized systems can be obtained along both routes, though the time-scale of the nonclassical route appears to be more realistic. The resemblance of the simulated and natural biominerals suggests that, underneath the immense biological complexity observed in living organisms, the underlying design principles for biological structures may be understood with simple math and simulated by phase-field theory. American Chemical Society 2021-06-04 /pmc/articles/PMC8317440/ /pubmed/34337606 http://dx.doi.org/10.1021/jacsau.1c00026 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Gránásy, László
Rátkai, László
Tóth, Gyula I.
Gilbert, Pupa U. P. A.
Zlotnikov, Igor
Pusztai, Tamás
Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism
title Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism
title_full Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism
title_fullStr Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism
title_full_unstemmed Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism
title_short Phase-Field Modeling of Biomineralization in Mollusks and Corals: Microstructure vs Formation Mechanism
title_sort phase-field modeling of biomineralization in mollusks and corals: microstructure vs formation mechanism
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317440/
https://www.ncbi.nlm.nih.gov/pubmed/34337606
http://dx.doi.org/10.1021/jacsau.1c00026
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