Cargando…

MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy

Colonoscopy is currently one of the main methods for the detection of rectal polyps, rectal cancer, and other diseases. With the rapid development of computer vision, deep learning–based semantic segmentation methods can be applied to the detection of medical lesions. However, it is challenging for...

Descripción completa

Detalles Bibliográficos
Autores principales: Su, Houcheng, Lin, Bin, Huang, Xiaoshuang, Li, Jiao, Jiang, Kailin, Duan, Xuliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317500/
https://www.ncbi.nlm.nih.gov/pubmed/34336808
http://dx.doi.org/10.3389/fbioe.2021.696251
_version_ 1783730082906374144
author Su, Houcheng
Lin, Bin
Huang, Xiaoshuang
Li, Jiao
Jiang, Kailin
Duan, Xuliang
author_facet Su, Houcheng
Lin, Bin
Huang, Xiaoshuang
Li, Jiao
Jiang, Kailin
Duan, Xuliang
author_sort Su, Houcheng
collection PubMed
description Colonoscopy is currently one of the main methods for the detection of rectal polyps, rectal cancer, and other diseases. With the rapid development of computer vision, deep learning–based semantic segmentation methods can be applied to the detection of medical lesions. However, it is challenging for current methods to detect polyps with high accuracy and real-time performance. To solve this problem, we propose a multi-branch feature fusion network (MBFFNet), which is an accurate real-time segmentation method for detecting colonoscopy. First, we use UNet as the basis of our model architecture and adopt stepwise sampling with channel multiplication to integrate features, which decreases the number of flops caused by stacking channels in UNet. Second, to improve model accuracy, we extract features from multiple layers and resize feature maps to the same size in different ways, such as up-sampling and pooling, to supplement information lost in multiplication-based up-sampling. Based on mIOU and Dice loss with cross entropy (CE), we conduct experiments in both CPU and GPU environments to verify the effectiveness of our model. The experimental results show that our proposed MBFFNet is superior to the selected baselines in terms of accuracy, model size, and flops. mIOU, F score, and Dice loss with CE reached 0.8952, 0.9450, and 0.1602, respectively, which were better than those of UNet, UNet++, and other networks. Compared with UNet, the flop count decreased by 73.2%, and the number of participants also decreased. The actual segmentation effect of MBFFNet is only lower than that of PraNet, the number of parameters is 78.27% of that of PraNet, and the flop count is 0.23% that of PraNet. In addition, experiments on other types of medical tasks show that MBFFNet has good potential for general application in medical image segmentation.
format Online
Article
Text
id pubmed-8317500
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-83175002021-07-29 MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy Su, Houcheng Lin, Bin Huang, Xiaoshuang Li, Jiao Jiang, Kailin Duan, Xuliang Front Bioeng Biotechnol Bioengineering and Biotechnology Colonoscopy is currently one of the main methods for the detection of rectal polyps, rectal cancer, and other diseases. With the rapid development of computer vision, deep learning–based semantic segmentation methods can be applied to the detection of medical lesions. However, it is challenging for current methods to detect polyps with high accuracy and real-time performance. To solve this problem, we propose a multi-branch feature fusion network (MBFFNet), which is an accurate real-time segmentation method for detecting colonoscopy. First, we use UNet as the basis of our model architecture and adopt stepwise sampling with channel multiplication to integrate features, which decreases the number of flops caused by stacking channels in UNet. Second, to improve model accuracy, we extract features from multiple layers and resize feature maps to the same size in different ways, such as up-sampling and pooling, to supplement information lost in multiplication-based up-sampling. Based on mIOU and Dice loss with cross entropy (CE), we conduct experiments in both CPU and GPU environments to verify the effectiveness of our model. The experimental results show that our proposed MBFFNet is superior to the selected baselines in terms of accuracy, model size, and flops. mIOU, F score, and Dice loss with CE reached 0.8952, 0.9450, and 0.1602, respectively, which were better than those of UNet, UNet++, and other networks. Compared with UNet, the flop count decreased by 73.2%, and the number of participants also decreased. The actual segmentation effect of MBFFNet is only lower than that of PraNet, the number of parameters is 78.27% of that of PraNet, and the flop count is 0.23% that of PraNet. In addition, experiments on other types of medical tasks show that MBFFNet has good potential for general application in medical image segmentation. Frontiers Media S.A. 2021-07-14 /pmc/articles/PMC8317500/ /pubmed/34336808 http://dx.doi.org/10.3389/fbioe.2021.696251 Text en Copyright © 2021 Su, Lin, Huang, Li, Jiang and Duan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Su, Houcheng
Lin, Bin
Huang, Xiaoshuang
Li, Jiao
Jiang, Kailin
Duan, Xuliang
MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy
title MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy
title_full MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy
title_fullStr MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy
title_full_unstemmed MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy
title_short MBFFNet: Multi-Branch Feature Fusion Network for Colonoscopy
title_sort mbffnet: multi-branch feature fusion network for colonoscopy
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317500/
https://www.ncbi.nlm.nih.gov/pubmed/34336808
http://dx.doi.org/10.3389/fbioe.2021.696251
work_keys_str_mv AT suhoucheng mbffnetmultibranchfeaturefusionnetworkforcolonoscopy
AT linbin mbffnetmultibranchfeaturefusionnetworkforcolonoscopy
AT huangxiaoshuang mbffnetmultibranchfeaturefusionnetworkforcolonoscopy
AT lijiao mbffnetmultibranchfeaturefusionnetworkforcolonoscopy
AT jiangkailin mbffnetmultibranchfeaturefusionnetworkforcolonoscopy
AT duanxuliang mbffnetmultibranchfeaturefusionnetworkforcolonoscopy