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A single–cell type transcriptomics map of human tissues

Advances in molecular profiling have opened up the possibility to map the expression of genes in cells, tissues, and organs in the human body. Here, we combined single-cell transcriptomics analysis with spatial antibody-based protein profiling to create a high-resolution single–cell type map of huma...

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Autores principales: Karlsson, Max, Zhang, Cheng, Méar, Loren, Zhong, Wen, Digre, Andreas, Katona, Borbala, Sjöstedt, Evelina, Butler, Lynn, Odeberg, Jacob, Dusart, Philip, Edfors, Fredrik, Oksvold, Per, von Feilitzen, Kalle, Zwahlen, Martin, Arif, Muhammad, Altay, Ozlem, Li, Xiangyu, Ozcan, Mehmet, Mardonoglu, Adil, Fagerberg, Linn, Mulder, Jan, Luo, Yonglun, Ponten, Fredrik, Uhlén, Mathias, Lindskog, Cecilia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8318366/
https://www.ncbi.nlm.nih.gov/pubmed/34321199
http://dx.doi.org/10.1126/sciadv.abh2169
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author Karlsson, Max
Zhang, Cheng
Méar, Loren
Zhong, Wen
Digre, Andreas
Katona, Borbala
Sjöstedt, Evelina
Butler, Lynn
Odeberg, Jacob
Dusart, Philip
Edfors, Fredrik
Oksvold, Per
von Feilitzen, Kalle
Zwahlen, Martin
Arif, Muhammad
Altay, Ozlem
Li, Xiangyu
Ozcan, Mehmet
Mardonoglu, Adil
Fagerberg, Linn
Mulder, Jan
Luo, Yonglun
Ponten, Fredrik
Uhlén, Mathias
Lindskog, Cecilia
author_facet Karlsson, Max
Zhang, Cheng
Méar, Loren
Zhong, Wen
Digre, Andreas
Katona, Borbala
Sjöstedt, Evelina
Butler, Lynn
Odeberg, Jacob
Dusart, Philip
Edfors, Fredrik
Oksvold, Per
von Feilitzen, Kalle
Zwahlen, Martin
Arif, Muhammad
Altay, Ozlem
Li, Xiangyu
Ozcan, Mehmet
Mardonoglu, Adil
Fagerberg, Linn
Mulder, Jan
Luo, Yonglun
Ponten, Fredrik
Uhlén, Mathias
Lindskog, Cecilia
author_sort Karlsson, Max
collection PubMed
description Advances in molecular profiling have opened up the possibility to map the expression of genes in cells, tissues, and organs in the human body. Here, we combined single-cell transcriptomics analysis with spatial antibody-based protein profiling to create a high-resolution single–cell type map of human tissues. An open access atlas has been launched to allow researchers to explore the expression of human protein-coding genes in 192 individual cell type clusters. An expression specificity classification was performed to determine the number of genes elevated in each cell type, allowing comparisons with bulk transcriptomics data. The analysis highlights distinct expression clusters corresponding to cell types sharing similar functions, both within the same organs and between organs.
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spelling pubmed-83183662021-08-10 A single–cell type transcriptomics map of human tissues Karlsson, Max Zhang, Cheng Méar, Loren Zhong, Wen Digre, Andreas Katona, Borbala Sjöstedt, Evelina Butler, Lynn Odeberg, Jacob Dusart, Philip Edfors, Fredrik Oksvold, Per von Feilitzen, Kalle Zwahlen, Martin Arif, Muhammad Altay, Ozlem Li, Xiangyu Ozcan, Mehmet Mardonoglu, Adil Fagerberg, Linn Mulder, Jan Luo, Yonglun Ponten, Fredrik Uhlén, Mathias Lindskog, Cecilia Sci Adv Research Articles Advances in molecular profiling have opened up the possibility to map the expression of genes in cells, tissues, and organs in the human body. Here, we combined single-cell transcriptomics analysis with spatial antibody-based protein profiling to create a high-resolution single–cell type map of human tissues. An open access atlas has been launched to allow researchers to explore the expression of human protein-coding genes in 192 individual cell type clusters. An expression specificity classification was performed to determine the number of genes elevated in each cell type, allowing comparisons with bulk transcriptomics data. The analysis highlights distinct expression clusters corresponding to cell types sharing similar functions, both within the same organs and between organs. American Association for the Advancement of Science 2021-07-28 /pmc/articles/PMC8318366/ /pubmed/34321199 http://dx.doi.org/10.1126/sciadv.abh2169 Text en Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Research Articles
Karlsson, Max
Zhang, Cheng
Méar, Loren
Zhong, Wen
Digre, Andreas
Katona, Borbala
Sjöstedt, Evelina
Butler, Lynn
Odeberg, Jacob
Dusart, Philip
Edfors, Fredrik
Oksvold, Per
von Feilitzen, Kalle
Zwahlen, Martin
Arif, Muhammad
Altay, Ozlem
Li, Xiangyu
Ozcan, Mehmet
Mardonoglu, Adil
Fagerberg, Linn
Mulder, Jan
Luo, Yonglun
Ponten, Fredrik
Uhlén, Mathias
Lindskog, Cecilia
A single–cell type transcriptomics map of human tissues
title A single–cell type transcriptomics map of human tissues
title_full A single–cell type transcriptomics map of human tissues
title_fullStr A single–cell type transcriptomics map of human tissues
title_full_unstemmed A single–cell type transcriptomics map of human tissues
title_short A single–cell type transcriptomics map of human tissues
title_sort single–cell type transcriptomics map of human tissues
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8318366/
https://www.ncbi.nlm.nih.gov/pubmed/34321199
http://dx.doi.org/10.1126/sciadv.abh2169
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