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Structural basis of early translocation events on the ribosome

Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA selection and translocation reactions that proceed rapidly (2–20 per second) and with a low error rate (around 10(−3) to 10(−5) at each step) over thousands of cycles(1). The cadence and fidelity of ribosome transit...

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Autores principales: Rundlet, Emily J., Holm, Mikael, Schacherl, Magdalena, Natchiar, S. Kundhavai, Altman, Roger B., Spahn, Christian M. T., Myasnikov, Alexander G., Blanchard, Scott C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8318882/
https://www.ncbi.nlm.nih.gov/pubmed/34234344
http://dx.doi.org/10.1038/s41586-021-03713-x
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author Rundlet, Emily J.
Holm, Mikael
Schacherl, Magdalena
Natchiar, S. Kundhavai
Altman, Roger B.
Spahn, Christian M. T.
Myasnikov, Alexander G.
Blanchard, Scott C.
author_facet Rundlet, Emily J.
Holm, Mikael
Schacherl, Magdalena
Natchiar, S. Kundhavai
Altman, Roger B.
Spahn, Christian M. T.
Myasnikov, Alexander G.
Blanchard, Scott C.
author_sort Rundlet, Emily J.
collection PubMed
description Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA selection and translocation reactions that proceed rapidly (2–20 per second) and with a low error rate (around 10(−3) to 10(−5) at each step) over thousands of cycles(1). The cadence and fidelity of ribosome transit through mRNA templates in discrete codon increments is a paradigm for movement in biological systems that must hold for diverse mRNA and tRNA substrates across domains of life. Here we use single-molecule fluorescence methods to guide the capture of structures of early translocation events on the bacterial ribosome. Our findings reveal that the bacterial GTPase elongation factor G specifically engages spontaneously achieved ribosome conformations while in an active, GTP-bound conformation to unlock and initiate peptidyl-tRNA translocation. These findings suggest that processes intrinsic to the pre-translocation ribosome complex can regulate the rate of protein synthesis, and that energy expenditure is used later in the translocation mechanism than previously proposed.
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spelling pubmed-83188822021-08-13 Structural basis of early translocation events on the ribosome Rundlet, Emily J. Holm, Mikael Schacherl, Magdalena Natchiar, S. Kundhavai Altman, Roger B. Spahn, Christian M. T. Myasnikov, Alexander G. Blanchard, Scott C. Nature Article Peptide-chain elongation during protein synthesis entails sequential aminoacyl-tRNA selection and translocation reactions that proceed rapidly (2–20 per second) and with a low error rate (around 10(−3) to 10(−5) at each step) over thousands of cycles(1). The cadence and fidelity of ribosome transit through mRNA templates in discrete codon increments is a paradigm for movement in biological systems that must hold for diverse mRNA and tRNA substrates across domains of life. Here we use single-molecule fluorescence methods to guide the capture of structures of early translocation events on the bacterial ribosome. Our findings reveal that the bacterial GTPase elongation factor G specifically engages spontaneously achieved ribosome conformations while in an active, GTP-bound conformation to unlock and initiate peptidyl-tRNA translocation. These findings suggest that processes intrinsic to the pre-translocation ribosome complex can regulate the rate of protein synthesis, and that energy expenditure is used later in the translocation mechanism than previously proposed. Nature Publishing Group UK 2021-07-07 2021 /pmc/articles/PMC8318882/ /pubmed/34234344 http://dx.doi.org/10.1038/s41586-021-03713-x Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Rundlet, Emily J.
Holm, Mikael
Schacherl, Magdalena
Natchiar, S. Kundhavai
Altman, Roger B.
Spahn, Christian M. T.
Myasnikov, Alexander G.
Blanchard, Scott C.
Structural basis of early translocation events on the ribosome
title Structural basis of early translocation events on the ribosome
title_full Structural basis of early translocation events on the ribosome
title_fullStr Structural basis of early translocation events on the ribosome
title_full_unstemmed Structural basis of early translocation events on the ribosome
title_short Structural basis of early translocation events on the ribosome
title_sort structural basis of early translocation events on the ribosome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8318882/
https://www.ncbi.nlm.nih.gov/pubmed/34234344
http://dx.doi.org/10.1038/s41586-021-03713-x
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