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309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula
Prokaryoplankton genomes from the deep marine sediments are less explored compared to shallow shore sediments. The Gulfs of Kathiawar peninsula experience varied currents and inputs from different on-shore activities. Any perturbations would directly influence the microbiome and their normal homeost...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8319310/ https://www.ncbi.nlm.nih.gov/pubmed/34321485 http://dx.doi.org/10.1038/s41597-021-00957-0 |
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author | Nathani, Neelam M. Dave, Kaushambee J. Vatsa, Priyanka P. Mahajan, Mayur S. Sharma, Parth Mootapally, Chandrashekar |
author_facet | Nathani, Neelam M. Dave, Kaushambee J. Vatsa, Priyanka P. Mahajan, Mayur S. Sharma, Parth Mootapally, Chandrashekar |
author_sort | Nathani, Neelam M. |
collection | PubMed |
description | Prokaryoplankton genomes from the deep marine sediments are less explored compared to shallow shore sediments. The Gulfs of Kathiawar peninsula experience varied currents and inputs from different on-shore activities. Any perturbations would directly influence the microbiome and their normal homeostasis. Advancements in reconstructing genomes from metagenomes allows us to understand the role of individual unculturable microbes in ecological niches like the Gulf sediments. Here, we report 309 bacterial and archaeal genomes assembled from metagenomics data of deep sediments from sites in the Gulf of Khambhat and Gulf of Kutch as well as a sample from the Arabian Sea. Phylogenomics classified them into 5 archaeal and 18 bacterial phyla. The genomes will facilitate understanding of the physiology, adaptation and impact of on-shore anthropogenic activities on the deep sediment microbes. |
format | Online Article Text |
id | pubmed-8319310 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-83193102021-08-02 309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula Nathani, Neelam M. Dave, Kaushambee J. Vatsa, Priyanka P. Mahajan, Mayur S. Sharma, Parth Mootapally, Chandrashekar Sci Data Data Descriptor Prokaryoplankton genomes from the deep marine sediments are less explored compared to shallow shore sediments. The Gulfs of Kathiawar peninsula experience varied currents and inputs from different on-shore activities. Any perturbations would directly influence the microbiome and their normal homeostasis. Advancements in reconstructing genomes from metagenomes allows us to understand the role of individual unculturable microbes in ecological niches like the Gulf sediments. Here, we report 309 bacterial and archaeal genomes assembled from metagenomics data of deep sediments from sites in the Gulf of Khambhat and Gulf of Kutch as well as a sample from the Arabian Sea. Phylogenomics classified them into 5 archaeal and 18 bacterial phyla. The genomes will facilitate understanding of the physiology, adaptation and impact of on-shore anthropogenic activities on the deep sediment microbes. Nature Publishing Group UK 2021-07-28 /pmc/articles/PMC8319310/ /pubmed/34321485 http://dx.doi.org/10.1038/s41597-021-00957-0 Text en © The Author(s) 2021, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Nathani, Neelam M. Dave, Kaushambee J. Vatsa, Priyanka P. Mahajan, Mayur S. Sharma, Parth Mootapally, Chandrashekar 309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula |
title | 309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula |
title_full | 309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula |
title_fullStr | 309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula |
title_full_unstemmed | 309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula |
title_short | 309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula |
title_sort | 309 metagenome assembled microbial genomes from deep sediment samples in the gulfs of kathiawar peninsula |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8319310/ https://www.ncbi.nlm.nih.gov/pubmed/34321485 http://dx.doi.org/10.1038/s41597-021-00957-0 |
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