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An ensemble learning approach to digital corona virus preliminary screening from cough sounds
This work develops a robust classifier for a COVID-19 pre-screening model from crowdsourced cough sound data. The crowdsourced cough recordings contain a variable number of coughs, with some input sound files more informative than the others. Accurate detection of COVID-19 from the sound datasets re...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8319422/ https://www.ncbi.nlm.nih.gov/pubmed/34321592 http://dx.doi.org/10.1038/s41598-021-95042-2 |
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author | Mohammed, Emad A. Keyhani, Mohammad Sanati-Nezhad, Amir Hejazi, S. Hossein Far, Behrouz H. |
author_facet | Mohammed, Emad A. Keyhani, Mohammad Sanati-Nezhad, Amir Hejazi, S. Hossein Far, Behrouz H. |
author_sort | Mohammed, Emad A. |
collection | PubMed |
description | This work develops a robust classifier for a COVID-19 pre-screening model from crowdsourced cough sound data. The crowdsourced cough recordings contain a variable number of coughs, with some input sound files more informative than the others. Accurate detection of COVID-19 from the sound datasets requires overcoming two main challenges (i) the variable number of coughs in each recording and (ii) the low number of COVID-positive cases compared to healthy coughs in the data. We use two open datasets of crowdsourced cough recordings and segment each cough recording into non-overlapping coughs. The segmentation enriches the original data without oversampling by splitting the original cough sound files into non-overlapping segments. Splitting the sound files enables us to increase the samples of the minority class (COVID-19) without changing the feature distribution of the COVID-19 samples resulted from applying oversampling techniques. Each cough sound segment is transformed into six image representations for further analyses. We conduct extensive experiments with shallow machine learning, Convolutional Neural Network (CNN), and pre-trained CNN models. The results of our models were compared to other recently published papers that apply machine learning to cough sound data for COVID-19 detection. Our method demonstrated a high performance using an ensemble model on the testing dataset with area under receiver operating characteristics curve = 0.77, precision = 0.80, recall = 0.71, F1 measure = 0.75, and Kappa = 0.53. The results show an improvement in the prediction accuracy of our COVID-19 pre-screening model compared to the other models. |
format | Online Article Text |
id | pubmed-8319422 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-83194222021-07-29 An ensemble learning approach to digital corona virus preliminary screening from cough sounds Mohammed, Emad A. Keyhani, Mohammad Sanati-Nezhad, Amir Hejazi, S. Hossein Far, Behrouz H. Sci Rep Article This work develops a robust classifier for a COVID-19 pre-screening model from crowdsourced cough sound data. The crowdsourced cough recordings contain a variable number of coughs, with some input sound files more informative than the others. Accurate detection of COVID-19 from the sound datasets requires overcoming two main challenges (i) the variable number of coughs in each recording and (ii) the low number of COVID-positive cases compared to healthy coughs in the data. We use two open datasets of crowdsourced cough recordings and segment each cough recording into non-overlapping coughs. The segmentation enriches the original data without oversampling by splitting the original cough sound files into non-overlapping segments. Splitting the sound files enables us to increase the samples of the minority class (COVID-19) without changing the feature distribution of the COVID-19 samples resulted from applying oversampling techniques. Each cough sound segment is transformed into six image representations for further analyses. We conduct extensive experiments with shallow machine learning, Convolutional Neural Network (CNN), and pre-trained CNN models. The results of our models were compared to other recently published papers that apply machine learning to cough sound data for COVID-19 detection. Our method demonstrated a high performance using an ensemble model on the testing dataset with area under receiver operating characteristics curve = 0.77, precision = 0.80, recall = 0.71, F1 measure = 0.75, and Kappa = 0.53. The results show an improvement in the prediction accuracy of our COVID-19 pre-screening model compared to the other models. Nature Publishing Group UK 2021-07-28 /pmc/articles/PMC8319422/ /pubmed/34321592 http://dx.doi.org/10.1038/s41598-021-95042-2 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Mohammed, Emad A. Keyhani, Mohammad Sanati-Nezhad, Amir Hejazi, S. Hossein Far, Behrouz H. An ensemble learning approach to digital corona virus preliminary screening from cough sounds |
title | An ensemble learning approach to digital corona virus preliminary screening from cough sounds |
title_full | An ensemble learning approach to digital corona virus preliminary screening from cough sounds |
title_fullStr | An ensemble learning approach to digital corona virus preliminary screening from cough sounds |
title_full_unstemmed | An ensemble learning approach to digital corona virus preliminary screening from cough sounds |
title_short | An ensemble learning approach to digital corona virus preliminary screening from cough sounds |
title_sort | ensemble learning approach to digital corona virus preliminary screening from cough sounds |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8319422/ https://www.ncbi.nlm.nih.gov/pubmed/34321592 http://dx.doi.org/10.1038/s41598-021-95042-2 |
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