Cargando…
Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments
Bacterial chemotaxis is a major testing ground for systems biology, including the role of fluctuations and individual variation. Individual bacteria vary in their tumbling frequency and adaptation time. Recently, large cell-cell variation was also discovered in chemotaxis gain, which determines the...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8319753/ https://www.ncbi.nlm.nih.gov/pubmed/34345809 http://dx.doi.org/10.1016/j.isci.2021.102796 |
_version_ | 1783730518186000384 |
---|---|
author | Karin, Omer Alon, Uri |
author_facet | Karin, Omer Alon, Uri |
author_sort | Karin, Omer |
collection | PubMed |
description | Bacterial chemotaxis is a major testing ground for systems biology, including the role of fluctuations and individual variation. Individual bacteria vary in their tumbling frequency and adaptation time. Recently, large cell-cell variation was also discovered in chemotaxis gain, which determines the sensitivity of the tumbling rate to attractant gradients. Variation in gain is puzzling, because low gain impairs chemotactic velocity. Here, we provide a functional explanation for gain variation by establishing a formal analogy between chemotaxis and algorithms for sampling probability distributions. We show that temporal fluctuations in gain implement simulated tempering, which allows sampling of attractant distributions with many local peaks. Periods of high gain allow bacteria to detect and climb gradients quickly, and periods of low gain allow them to move to new peaks. Gain fluctuations thus allow bacteria to thrive in complex environments, and more generally they may play an important functional role for organism navigation. |
format | Online Article Text |
id | pubmed-8319753 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-83197532021-08-02 Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments Karin, Omer Alon, Uri iScience Article Bacterial chemotaxis is a major testing ground for systems biology, including the role of fluctuations and individual variation. Individual bacteria vary in their tumbling frequency and adaptation time. Recently, large cell-cell variation was also discovered in chemotaxis gain, which determines the sensitivity of the tumbling rate to attractant gradients. Variation in gain is puzzling, because low gain impairs chemotactic velocity. Here, we provide a functional explanation for gain variation by establishing a formal analogy between chemotaxis and algorithms for sampling probability distributions. We show that temporal fluctuations in gain implement simulated tempering, which allows sampling of attractant distributions with many local peaks. Periods of high gain allow bacteria to detect and climb gradients quickly, and periods of low gain allow them to move to new peaks. Gain fluctuations thus allow bacteria to thrive in complex environments, and more generally they may play an important functional role for organism navigation. Elsevier 2021-06-28 /pmc/articles/PMC8319753/ /pubmed/34345809 http://dx.doi.org/10.1016/j.isci.2021.102796 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Karin, Omer Alon, Uri Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments |
title | Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments |
title_full | Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments |
title_fullStr | Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments |
title_full_unstemmed | Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments |
title_short | Temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments |
title_sort | temporal fluctuations in chemotaxis gain implement a simulated-tempering strategy for efficient navigation in complex environments |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8319753/ https://www.ncbi.nlm.nih.gov/pubmed/34345809 http://dx.doi.org/10.1016/j.isci.2021.102796 |
work_keys_str_mv | AT karinomer temporalfluctuationsinchemotaxisgainimplementasimulatedtemperingstrategyforefficientnavigationincomplexenvironments AT alonuri temporalfluctuationsinchemotaxisgainimplementasimulatedtemperingstrategyforefficientnavigationincomplexenvironments |