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Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract

Dynamic and real-time MRI (rtMRI) of human speech is an active field of research, with interest from both the linguistics and clinical communities. At present, different research groups are investigating a range of rtMRI acquisition and reconstruction approaches to visualise the speech organs. Simil...

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Autores principales: Martin, Joe, Ruthven, Matthieu, Boubertakh, Redha, Miquel, Marc E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8320850/
https://www.ncbi.nlm.nih.gov/pubmed/34460743
http://dx.doi.org/10.3390/jimaging6090086
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author Martin, Joe
Ruthven, Matthieu
Boubertakh, Redha
Miquel, Marc E.
author_facet Martin, Joe
Ruthven, Matthieu
Boubertakh, Redha
Miquel, Marc E.
author_sort Martin, Joe
collection PubMed
description Dynamic and real-time MRI (rtMRI) of human speech is an active field of research, with interest from both the linguistics and clinical communities. At present, different research groups are investigating a range of rtMRI acquisition and reconstruction approaches to visualise the speech organs. Similar to other moving organs, it is difficult to create a physical phantom of the speech organs to optimise these approaches; therefore, the optimisation requires extensive scanner access and imaging of volunteers. As previously demonstrated in cardiac imaging, realistic numerical phantoms can be useful tools for optimising rtMRI approaches and reduce reliance on scanner access and imaging volunteers. However, currently, no such speech rtMRI phantom exists. In this work, a numerical phantom for optimising speech rtMRI approaches was developed and tested on different reconstruction schemes. The novel phantom comprised a dynamic image series and corresponding k-space data of a single mid-sagittal slice with a temporal resolution of 30 frames per second (fps). The phantom was developed based on images of a volunteer acquired at a frame rate of 10 fps. The creation of the numerical phantom involved the following steps: image acquisition, image enhancement, segmentation, mask optimisation, through-time and spatial interpolation and finally the derived k-space phantom. The phantom was used to: (1) test different k-space sampling schemes (Cartesian, radial and spiral); (2) create lower frame rate acquisitions by simulating segmented k-space acquisitions; (3) simulate parallel imaging reconstructions (SENSE and GRAPPA). This demonstrated how such a numerical phantom could be used to optimise images and test multiple sampling strategies without extensive scanner access.
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spelling pubmed-83208502021-08-26 Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract Martin, Joe Ruthven, Matthieu Boubertakh, Redha Miquel, Marc E. J Imaging Article Dynamic and real-time MRI (rtMRI) of human speech is an active field of research, with interest from both the linguistics and clinical communities. At present, different research groups are investigating a range of rtMRI acquisition and reconstruction approaches to visualise the speech organs. Similar to other moving organs, it is difficult to create a physical phantom of the speech organs to optimise these approaches; therefore, the optimisation requires extensive scanner access and imaging of volunteers. As previously demonstrated in cardiac imaging, realistic numerical phantoms can be useful tools for optimising rtMRI approaches and reduce reliance on scanner access and imaging volunteers. However, currently, no such speech rtMRI phantom exists. In this work, a numerical phantom for optimising speech rtMRI approaches was developed and tested on different reconstruction schemes. The novel phantom comprised a dynamic image series and corresponding k-space data of a single mid-sagittal slice with a temporal resolution of 30 frames per second (fps). The phantom was developed based on images of a volunteer acquired at a frame rate of 10 fps. The creation of the numerical phantom involved the following steps: image acquisition, image enhancement, segmentation, mask optimisation, through-time and spatial interpolation and finally the derived k-space phantom. The phantom was used to: (1) test different k-space sampling schemes (Cartesian, radial and spiral); (2) create lower frame rate acquisitions by simulating segmented k-space acquisitions; (3) simulate parallel imaging reconstructions (SENSE and GRAPPA). This demonstrated how such a numerical phantom could be used to optimise images and test multiple sampling strategies without extensive scanner access. MDPI 2020-08-27 /pmc/articles/PMC8320850/ /pubmed/34460743 http://dx.doi.org/10.3390/jimaging6090086 Text en © 2020 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Martin, Joe
Ruthven, Matthieu
Boubertakh, Redha
Miquel, Marc E.
Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract
title Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract
title_full Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract
title_fullStr Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract
title_full_unstemmed Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract
title_short Realistic Dynamic Numerical Phantom for MRI of the Upper Vocal Tract
title_sort realistic dynamic numerical phantom for mri of the upper vocal tract
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8320850/
https://www.ncbi.nlm.nih.gov/pubmed/34460743
http://dx.doi.org/10.3390/jimaging6090086
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