Cargando…

Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) †

This paper presents a novel software framework, called macrosight, which incorporates routines to detect, track, and analyze the shape and movement of objects, with special emphasis on macrophages. The key feature presented in macrosight consists of an algorithm to assess the changes of direction de...

Descripción completa

Detalles Bibliográficos
Autores principales: Solís-Lemus , José Alonso, Stramer , Brian, Slabaugh, Greg, Reyes-Aldasoro, Constantino Carlos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8320860/
https://www.ncbi.nlm.nih.gov/pubmed/34465701
http://dx.doi.org/10.3390/jimaging5010017
_version_ 1783730715285782528
author Solís-Lemus , José Alonso
Stramer , Brian
Slabaugh, Greg
Reyes-Aldasoro, Constantino Carlos
author_facet Solís-Lemus , José Alonso
Stramer , Brian
Slabaugh, Greg
Reyes-Aldasoro, Constantino Carlos
author_sort Solís-Lemus , José Alonso
collection PubMed
description This paper presents a novel software framework, called macrosight, which incorporates routines to detect, track, and analyze the shape and movement of objects, with special emphasis on macrophages. The key feature presented in macrosight consists of an algorithm to assess the changes of direction derived from cell–cell contact, where an interaction is assumed to occur. The main biological motivation is the determination of certain cell interactions influencing cell migration. Thus, the main objective of this work is to provide insights into the notion that interactions between cell structures cause a change in orientation. Macrosight analyzes the change of direction of cells before and after they come in contact with another cell. Interactions are determined when the cells overlap and form clumps of two or more cells. The framework integrates a segmentation technique capable of detecting overlapping cells and a tracking framework into a tool for the analysis of the trajectories of cells before and after they overlap. Preliminary results show promise into the analysis and the hypothesis proposed, and lays the groundwork for further developments. The extensive experimentation and data analysis show, with statistical significance, that under certain conditions, the movement changes before and after an interaction are different from movement in controlled cases.
format Online
Article
Text
id pubmed-8320860
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-83208602021-08-26 Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) † Solís-Lemus , José Alonso Stramer , Brian Slabaugh, Greg Reyes-Aldasoro, Constantino Carlos J Imaging Article This paper presents a novel software framework, called macrosight, which incorporates routines to detect, track, and analyze the shape and movement of objects, with special emphasis on macrophages. The key feature presented in macrosight consists of an algorithm to assess the changes of direction derived from cell–cell contact, where an interaction is assumed to occur. The main biological motivation is the determination of certain cell interactions influencing cell migration. Thus, the main objective of this work is to provide insights into the notion that interactions between cell structures cause a change in orientation. Macrosight analyzes the change of direction of cells before and after they come in contact with another cell. Interactions are determined when the cells overlap and form clumps of two or more cells. The framework integrates a segmentation technique capable of detecting overlapping cells and a tracking framework into a tool for the analysis of the trajectories of cells before and after they overlap. Preliminary results show promise into the analysis and the hypothesis proposed, and lays the groundwork for further developments. The extensive experimentation and data analysis show, with statistical significance, that under certain conditions, the movement changes before and after an interaction are different from movement in controlled cases. MDPI 2019-01-14 /pmc/articles/PMC8320860/ /pubmed/34465701 http://dx.doi.org/10.3390/jimaging5010017 Text en © 2019 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Solís-Lemus , José Alonso
Stramer , Brian
Slabaugh, Greg
Reyes-Aldasoro, Constantino Carlos
Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) †
title Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) †
title_full Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) †
title_fullStr Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) †
title_full_unstemmed Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) †
title_short Macrosight: A Novel Framework to Analyze the Shape and Movement of Interacting Macrophages Using Matlab(®) †
title_sort macrosight: a novel framework to analyze the shape and movement of interacting macrophages using matlab(®) †
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8320860/
https://www.ncbi.nlm.nih.gov/pubmed/34465701
http://dx.doi.org/10.3390/jimaging5010017
work_keys_str_mv AT solislemusjosealonso macrosightanovelframeworktoanalyzetheshapeandmovementofinteractingmacrophagesusingmatlab
AT stramerbrian macrosightanovelframeworktoanalyzetheshapeandmovementofinteractingmacrophagesusingmatlab
AT slabaughgreg macrosightanovelframeworktoanalyzetheshapeandmovementofinteractingmacrophagesusingmatlab
AT reyesaldasoroconstantinocarlos macrosightanovelframeworktoanalyzetheshapeandmovementofinteractingmacrophagesusingmatlab