Cargando…

Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides †

The evaluation of breast cancer grades in immunohistochemistry (IHC) slides takes into account various types of visual markers and morphological features of stained membrane regions. Digital pathology algorithms using whole slide images (WSIs) of histology slides have recently been finding several a...

Descripción completa

Detalles Bibliográficos
Autor principal: Mukundan, Ramakrishnan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8320919/
https://www.ncbi.nlm.nih.gov/pubmed/34460463
http://dx.doi.org/10.3390/jimaging5030035
_version_ 1783730727911686144
author Mukundan, Ramakrishnan
author_facet Mukundan, Ramakrishnan
author_sort Mukundan, Ramakrishnan
collection PubMed
description The evaluation of breast cancer grades in immunohistochemistry (IHC) slides takes into account various types of visual markers and morphological features of stained membrane regions. Digital pathology algorithms using whole slide images (WSIs) of histology slides have recently been finding several applications in such computer-assisted evaluations. Features that are directly related to biomarkers used by pathologists are generally preferred over the pixel values of entire images, even though the latter has more information content. This paper explores in detail various types of feature measurements that are suitable for the automated scoring of human epidermal growth factor receptor 2 (HER2) in histology slides. These are intensity features known as characteristic curves, texture features in the form of uniform local binary patterns (ULBPs), morphological features specifying connectivity of regions, and first-order statistical features of the overall intensity distribution. This paper considers important properties of the above features and outlines methods for reducing information redundancy, maximizing inter-class separability, and improving classification accuracy in the combined feature set. This paper also presents a detailed experimental analysis performed using the aforementioned features on a WSI dataset of IHC stained slides.
format Online
Article
Text
id pubmed-8320919
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-83209192021-08-26 Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides † Mukundan, Ramakrishnan J Imaging Article The evaluation of breast cancer grades in immunohistochemistry (IHC) slides takes into account various types of visual markers and morphological features of stained membrane regions. Digital pathology algorithms using whole slide images (WSIs) of histology slides have recently been finding several applications in such computer-assisted evaluations. Features that are directly related to biomarkers used by pathologists are generally preferred over the pixel values of entire images, even though the latter has more information content. This paper explores in detail various types of feature measurements that are suitable for the automated scoring of human epidermal growth factor receptor 2 (HER2) in histology slides. These are intensity features known as characteristic curves, texture features in the form of uniform local binary patterns (ULBPs), morphological features specifying connectivity of regions, and first-order statistical features of the overall intensity distribution. This paper considers important properties of the above features and outlines methods for reducing information redundancy, maximizing inter-class separability, and improving classification accuracy in the combined feature set. This paper also presents a detailed experimental analysis performed using the aforementioned features on a WSI dataset of IHC stained slides. MDPI 2019-03-10 /pmc/articles/PMC8320919/ /pubmed/34460463 http://dx.doi.org/10.3390/jimaging5030035 Text en © 2019 by the author. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Mukundan, Ramakrishnan
Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides †
title Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides †
title_full Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides †
title_fullStr Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides †
title_full_unstemmed Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides †
title_short Analysis of Image Feature Characteristics for Automated Scoring of HER2 in Histology Slides †
title_sort analysis of image feature characteristics for automated scoring of her2 in histology slides †
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8320919/
https://www.ncbi.nlm.nih.gov/pubmed/34460463
http://dx.doi.org/10.3390/jimaging5030035
work_keys_str_mv AT mukundanramakrishnan analysisofimagefeaturecharacteristicsforautomatedscoringofher2inhistologyslides