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Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation

The manual delineation of region of interest (RoI) in 3D magnetic resonance imaging (MRI) of the prostate is time-consuming and subjective. Correct identification of prostate tissue is helpful to define a precise RoI to be used in CAD systems in clinical practice during diagnostic imaging, radiother...

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Autores principales: Cem Birbiri, Ufuk, Hamidinekoo, Azam, Grall, Amélie, Malcolm, Paul, Zwiggelaar, Reyer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321056/
https://www.ncbi.nlm.nih.gov/pubmed/34460740
http://dx.doi.org/10.3390/jimaging6090083
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author Cem Birbiri, Ufuk
Hamidinekoo, Azam
Grall, Amélie
Malcolm, Paul
Zwiggelaar, Reyer
author_facet Cem Birbiri, Ufuk
Hamidinekoo, Azam
Grall, Amélie
Malcolm, Paul
Zwiggelaar, Reyer
author_sort Cem Birbiri, Ufuk
collection PubMed
description The manual delineation of region of interest (RoI) in 3D magnetic resonance imaging (MRI) of the prostate is time-consuming and subjective. Correct identification of prostate tissue is helpful to define a precise RoI to be used in CAD systems in clinical practice during diagnostic imaging, radiotherapy and monitoring the progress of disease. Conditional GAN (cGAN), cycleGAN and U-Net models and their performances were studied for the detection and segmentation of prostate tissue in 3D multi-parametric MRI scans. These models were trained and evaluated on MRI data from 40 patients with biopsy-proven prostate cancer. Due to the limited amount of available training data, three augmentation schemes were proposed to artificially increase the training samples. These models were tested on a clinical dataset annotated for this study and on a public dataset (PROMISE12). The cGAN model outperformed the U-Net and cycleGAN predictions owing to the inclusion of paired image supervision. Based on our quantitative results, cGAN gained a Dice score of 0.78 and 0.75 on the private and the PROMISE12 public datasets, respectively.
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spelling pubmed-83210562021-08-26 Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation Cem Birbiri, Ufuk Hamidinekoo, Azam Grall, Amélie Malcolm, Paul Zwiggelaar, Reyer J Imaging Article The manual delineation of region of interest (RoI) in 3D magnetic resonance imaging (MRI) of the prostate is time-consuming and subjective. Correct identification of prostate tissue is helpful to define a precise RoI to be used in CAD systems in clinical practice during diagnostic imaging, radiotherapy and monitoring the progress of disease. Conditional GAN (cGAN), cycleGAN and U-Net models and their performances were studied for the detection and segmentation of prostate tissue in 3D multi-parametric MRI scans. These models were trained and evaluated on MRI data from 40 patients with biopsy-proven prostate cancer. Due to the limited amount of available training data, three augmentation schemes were proposed to artificially increase the training samples. These models were tested on a clinical dataset annotated for this study and on a public dataset (PROMISE12). The cGAN model outperformed the U-Net and cycleGAN predictions owing to the inclusion of paired image supervision. Based on our quantitative results, cGAN gained a Dice score of 0.78 and 0.75 on the private and the PROMISE12 public datasets, respectively. MDPI 2020-08-24 /pmc/articles/PMC8321056/ /pubmed/34460740 http://dx.doi.org/10.3390/jimaging6090083 Text en © 2020 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Cem Birbiri, Ufuk
Hamidinekoo, Azam
Grall, Amélie
Malcolm, Paul
Zwiggelaar, Reyer
Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation
title Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation
title_full Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation
title_fullStr Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation
title_full_unstemmed Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation
title_short Investigating the Performance of Generative Adversarial Networks for Prostate Tissue Detection and Segmentation
title_sort investigating the performance of generative adversarial networks for prostate tissue detection and segmentation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321056/
https://www.ncbi.nlm.nih.gov/pubmed/34460740
http://dx.doi.org/10.3390/jimaging6090083
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