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Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model †
Much recent research focuses on how to make disease detection more accurate as well as “slimmer”, i.e., allowing analysis with smaller datasets. Explanatory models are a hot research topic because they explain how the data are generated. We propose a spatial explanatory modelling approach that combi...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321139/ https://www.ncbi.nlm.nih.gov/pubmed/34460590 http://dx.doi.org/10.3390/jimaging6060044 |
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author | Zhu, Wenyue Ku, Jae Yee Zheng, Yalin Knox, Paul C. Kolamunnage-Dona, Ruwanthi Czanner, Gabriela |
author_facet | Zhu, Wenyue Ku, Jae Yee Zheng, Yalin Knox, Paul C. Kolamunnage-Dona, Ruwanthi Czanner, Gabriela |
author_sort | Zhu, Wenyue |
collection | PubMed |
description | Much recent research focuses on how to make disease detection more accurate as well as “slimmer”, i.e., allowing analysis with smaller datasets. Explanatory models are a hot research topic because they explain how the data are generated. We propose a spatial explanatory modelling approach that combines Optical Coherence Tomography (OCT) retinal imaging data with clinical information. Our model consists of a spatial linear mixed effects inference framework, which innovatively models the spatial topography of key information via mixed effects and spatial error structures, thus effectively modelling the shape of the thickness map. We show that our spatial linear mixed effects (SLME) model outperforms traditional analysis-of-variance approaches in the analysis of Heidelberg OCT retinal thickness data from a prospective observational study, involving 300 participants with diabetes and 50 age-matched controls. Our SLME model has a higher power for detecting the difference between disease groups, and it shows where the shape of retinal thickness profiles differs between the eyes of participants with diabetes and the eyes of healthy controls. In simulated data, the SLME model demonstrates how incorporating spatial correlations can increase the accuracy of the statistical inferences. This model is crucial in the understanding of the progression of retinal thickness changes in diabetic maculopathy to aid clinicians for early planning of effective treatment. It can be extended to disease monitoring and prognosis in other diseases and with other imaging technologies. |
format | Online Article Text |
id | pubmed-8321139 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-83211392021-08-26 Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model † Zhu, Wenyue Ku, Jae Yee Zheng, Yalin Knox, Paul C. Kolamunnage-Dona, Ruwanthi Czanner, Gabriela J Imaging Article Much recent research focuses on how to make disease detection more accurate as well as “slimmer”, i.e., allowing analysis with smaller datasets. Explanatory models are a hot research topic because they explain how the data are generated. We propose a spatial explanatory modelling approach that combines Optical Coherence Tomography (OCT) retinal imaging data with clinical information. Our model consists of a spatial linear mixed effects inference framework, which innovatively models the spatial topography of key information via mixed effects and spatial error structures, thus effectively modelling the shape of the thickness map. We show that our spatial linear mixed effects (SLME) model outperforms traditional analysis-of-variance approaches in the analysis of Heidelberg OCT retinal thickness data from a prospective observational study, involving 300 participants with diabetes and 50 age-matched controls. Our SLME model has a higher power for detecting the difference between disease groups, and it shows where the shape of retinal thickness profiles differs between the eyes of participants with diabetes and the eyes of healthy controls. In simulated data, the SLME model demonstrates how incorporating spatial correlations can increase the accuracy of the statistical inferences. This model is crucial in the understanding of the progression of retinal thickness changes in diabetic maculopathy to aid clinicians for early planning of effective treatment. It can be extended to disease monitoring and prognosis in other diseases and with other imaging technologies. MDPI 2020-06-05 /pmc/articles/PMC8321139/ /pubmed/34460590 http://dx.doi.org/10.3390/jimaging6060044 Text en © 2020 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ). |
spellingShingle | Article Zhu, Wenyue Ku, Jae Yee Zheng, Yalin Knox, Paul C. Kolamunnage-Dona, Ruwanthi Czanner, Gabriela Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model † |
title | Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model † |
title_full | Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model † |
title_fullStr | Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model † |
title_full_unstemmed | Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model † |
title_short | Spatial Linear Mixed Effects Modelling for OCT Images: SLME Model † |
title_sort | spatial linear mixed effects modelling for oct images: slme model † |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321139/ https://www.ncbi.nlm.nih.gov/pubmed/34460590 http://dx.doi.org/10.3390/jimaging6060044 |
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