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EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection

Current research in automated disease detection focuses on making algorithms “slimmer” reducing the need for large training datasets and accelerating recalibration for new data while achieving high accuracy. The development of slimmer models has become a hot research topic in medical imaging. In thi...

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Autores principales: Krishna Adithya, Venkatesh, Williams, Bryan M., Czanner, Silvester, Kavitha, Srinivasan, Friedman, David S., Willoughby, Colin E., Venkatesh, Rengaraj, Czanner, Gabriela
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321378/
http://dx.doi.org/10.3390/jimaging7060092
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author Krishna Adithya, Venkatesh
Williams, Bryan M.
Czanner, Silvester
Kavitha, Srinivasan
Friedman, David S.
Willoughby, Colin E.
Venkatesh, Rengaraj
Czanner, Gabriela
author_facet Krishna Adithya, Venkatesh
Williams, Bryan M.
Czanner, Silvester
Kavitha, Srinivasan
Friedman, David S.
Willoughby, Colin E.
Venkatesh, Rengaraj
Czanner, Gabriela
author_sort Krishna Adithya, Venkatesh
collection PubMed
description Current research in automated disease detection focuses on making algorithms “slimmer” reducing the need for large training datasets and accelerating recalibration for new data while achieving high accuracy. The development of slimmer models has become a hot research topic in medical imaging. In this work, we develop a two-phase model for glaucoma detection, identifying and exploiting a redundancy in fundus image data relating particularly to the geometry. We propose a novel algorithm for the cup and disc segmentation “EffUnet” with an efficient convolution block and combine this with an extended spatial generative approach for geometry modelling and classification, termed “SpaGen” We demonstrate the high accuracy achievable by EffUnet in detecting the optic disc and cup boundaries and show how our algorithm can be quickly trained with new data by recalibrating the EffUnet layer only. Our resulting glaucoma detection algorithm, “EffUnet-SpaGen”, is optimized to significantly reduce the computational burden while at the same time surpassing the current state-of-art in glaucoma detection algorithms with AUROC 0.997 and 0.969 in the benchmark online datasets ORIGA and DRISHTI, respectively. Our algorithm also allows deformed areas of the optic rim to be displayed and investigated, providing explainability, which is crucial to successful adoption and implementation in clinical settings.
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spelling pubmed-83213782021-08-26 EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection Krishna Adithya, Venkatesh Williams, Bryan M. Czanner, Silvester Kavitha, Srinivasan Friedman, David S. Willoughby, Colin E. Venkatesh, Rengaraj Czanner, Gabriela J Imaging Article Current research in automated disease detection focuses on making algorithms “slimmer” reducing the need for large training datasets and accelerating recalibration for new data while achieving high accuracy. The development of slimmer models has become a hot research topic in medical imaging. In this work, we develop a two-phase model for glaucoma detection, identifying and exploiting a redundancy in fundus image data relating particularly to the geometry. We propose a novel algorithm for the cup and disc segmentation “EffUnet” with an efficient convolution block and combine this with an extended spatial generative approach for geometry modelling and classification, termed “SpaGen” We demonstrate the high accuracy achievable by EffUnet in detecting the optic disc and cup boundaries and show how our algorithm can be quickly trained with new data by recalibrating the EffUnet layer only. Our resulting glaucoma detection algorithm, “EffUnet-SpaGen”, is optimized to significantly reduce the computational burden while at the same time surpassing the current state-of-art in glaucoma detection algorithms with AUROC 0.997 and 0.969 in the benchmark online datasets ORIGA and DRISHTI, respectively. Our algorithm also allows deformed areas of the optic rim to be displayed and investigated, providing explainability, which is crucial to successful adoption and implementation in clinical settings. MDPI 2021-05-30 /pmc/articles/PMC8321378/ http://dx.doi.org/10.3390/jimaging7060092 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Krishna Adithya, Venkatesh
Williams, Bryan M.
Czanner, Silvester
Kavitha, Srinivasan
Friedman, David S.
Willoughby, Colin E.
Venkatesh, Rengaraj
Czanner, Gabriela
EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection
title EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection
title_full EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection
title_fullStr EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection
title_full_unstemmed EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection
title_short EffUnet-SpaGen: An Efficient and Spatial Generative Approach to Glaucoma Detection
title_sort effunet-spagen: an efficient and spatial generative approach to glaucoma detection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321378/
http://dx.doi.org/10.3390/jimaging7060092
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