The Pop-Gen Pipeline Platform: A Software Platform for Population Genomic Analyses

The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses. The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python environment. Functions were developed to encompass entire workflows,...

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Detalles Bibliográficos
Autores principales: Webb, Andrew, Knoblauch, Jared, Sabankar, Nitesh, Kallur, Apeksha Sukesh, Hey, Jody, Sethuraman, Arun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Resources
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321520/
https://www.ncbi.nlm.nih.gov/pubmed/33950197
http://dx.doi.org/10.1093/molbev/msab113
Descripción
Sumario:The Pop-Gen Pipeline Platform (PPP) is a software platform for population genomic analyses. The PPP was designed as a collection of scripts that facilitate common population genomic workflows in a consistent and standardized Python environment. Functions were developed to encompass entire workflows, including input preparation, file format conversion, various population genomic analyses, and output generation. The platform has also been developed with reproducibility and extensibility of analyses in mind. The PPP is an open-source package that is available for download and use at https://ppp.readthedocs.io/en/latest/PPP_pages/install.html.

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