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Interrogating theoretical models of neural computation with emergent property inference
A cornerstone of theoretical neuroscience is the circuit model: a system of equations that captures a hypothesized neural mechanism. Such models are valuable when they give rise to an experimentally observed phenomenon -- whether behavioral or a pattern of neural activity -- and thus can offer insig...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321557/ https://www.ncbi.nlm.nih.gov/pubmed/34323690 http://dx.doi.org/10.7554/eLife.56265 |
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author | Bittner, Sean R Palmigiano, Agostina Piet, Alex T Duan, Chunyu A Brody, Carlos D Miller, Kenneth D Cunningham, John |
author_facet | Bittner, Sean R Palmigiano, Agostina Piet, Alex T Duan, Chunyu A Brody, Carlos D Miller, Kenneth D Cunningham, John |
author_sort | Bittner, Sean R |
collection | PubMed |
description | A cornerstone of theoretical neuroscience is the circuit model: a system of equations that captures a hypothesized neural mechanism. Such models are valuable when they give rise to an experimentally observed phenomenon -- whether behavioral or a pattern of neural activity -- and thus can offer insights into neural computation. The operation of these circuits, like all models, critically depends on the choice of model parameters. A key step is then to identify the model parameters consistent with observed phenomena: to solve the inverse problem. In this work, we present a novel technique, emergent property inference (EPI), that brings the modern probabilistic modeling toolkit to theoretical neuroscience. When theorizing circuit models, theoreticians predominantly focus on reproducing computational properties rather than a particular dataset. Our method uses deep neural networks to learn parameter distributions with these computational properties. This methodology is introduced through a motivational example of parameter inference in the stomatogastric ganglion. EPI is then shown to allow precise control over the behavior of inferred parameters and to scale in parameter dimension better than alternative techniques. In the remainder of this work, we present novel theoretical findings in models of primary visual cortex and superior colliculus, which were gained through the examination of complex parametric structure captured by EPI. Beyond its scientific contribution, this work illustrates the variety of analyses possible once deep learning is harnessed towards solving theoretical inverse problems. |
format | Online Article Text |
id | pubmed-8321557 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-83215572021-07-30 Interrogating theoretical models of neural computation with emergent property inference Bittner, Sean R Palmigiano, Agostina Piet, Alex T Duan, Chunyu A Brody, Carlos D Miller, Kenneth D Cunningham, John eLife Computational and Systems Biology A cornerstone of theoretical neuroscience is the circuit model: a system of equations that captures a hypothesized neural mechanism. Such models are valuable when they give rise to an experimentally observed phenomenon -- whether behavioral or a pattern of neural activity -- and thus can offer insights into neural computation. The operation of these circuits, like all models, critically depends on the choice of model parameters. A key step is then to identify the model parameters consistent with observed phenomena: to solve the inverse problem. In this work, we present a novel technique, emergent property inference (EPI), that brings the modern probabilistic modeling toolkit to theoretical neuroscience. When theorizing circuit models, theoreticians predominantly focus on reproducing computational properties rather than a particular dataset. Our method uses deep neural networks to learn parameter distributions with these computational properties. This methodology is introduced through a motivational example of parameter inference in the stomatogastric ganglion. EPI is then shown to allow precise control over the behavior of inferred parameters and to scale in parameter dimension better than alternative techniques. In the remainder of this work, we present novel theoretical findings in models of primary visual cortex and superior colliculus, which were gained through the examination of complex parametric structure captured by EPI. Beyond its scientific contribution, this work illustrates the variety of analyses possible once deep learning is harnessed towards solving theoretical inverse problems. eLife Sciences Publications, Ltd 2021-07-29 /pmc/articles/PMC8321557/ /pubmed/34323690 http://dx.doi.org/10.7554/eLife.56265 Text en © 2021, Bittner et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Computational and Systems Biology Bittner, Sean R Palmigiano, Agostina Piet, Alex T Duan, Chunyu A Brody, Carlos D Miller, Kenneth D Cunningham, John Interrogating theoretical models of neural computation with emergent property inference |
title | Interrogating theoretical models of neural computation with emergent property inference |
title_full | Interrogating theoretical models of neural computation with emergent property inference |
title_fullStr | Interrogating theoretical models of neural computation with emergent property inference |
title_full_unstemmed | Interrogating theoretical models of neural computation with emergent property inference |
title_short | Interrogating theoretical models of neural computation with emergent property inference |
title_sort | interrogating theoretical models of neural computation with emergent property inference |
topic | Computational and Systems Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8321557/ https://www.ncbi.nlm.nih.gov/pubmed/34323690 http://dx.doi.org/10.7554/eLife.56265 |
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