Cargando…
Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia
OBJECTIVE: The risk of contracting tuberculosis (TB) and the efficacy of TB therapy are affected by several factors, including genetic variation among populations. In the Indonesian population, data on the genes involved in drug transport and metabolism of TB therapy are limited. The aim of this stu...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8325820/ https://www.ncbi.nlm.nih.gov/pubmed/34332626 http://dx.doi.org/10.1186/s13104-021-05711-8 |
_version_ | 1783731627438899200 |
---|---|
author | Barliana, Melisa Intan Kusuma, Arif Satria Wira Insani, Widya Norma Alfian, Sofa Dewi Diantini, Ajeng Mutakin, Mutakin Rostinawati, Tina Herlambang, Herlambang Puspitasari, Irma Melyani Suwantika, Auliya Abdurrohim Abdulah, Rizky |
author_facet | Barliana, Melisa Intan Kusuma, Arif Satria Wira Insani, Widya Norma Alfian, Sofa Dewi Diantini, Ajeng Mutakin, Mutakin Rostinawati, Tina Herlambang, Herlambang Puspitasari, Irma Melyani Suwantika, Auliya Abdurrohim Abdulah, Rizky |
author_sort | Barliana, Melisa Intan |
collection | PubMed |
description | OBJECTIVE: The risk of contracting tuberculosis (TB) and the efficacy of TB therapy are affected by several factors, including genetic variation among populations. In the Indonesian population, data on the genes involved in drug transport and metabolism of TB therapy are limited. The aim of this study was to identify the genetic profile of the ABCB1 gene (rs1128503 and rs1045642) and CYP2E1 gene (rs3813867) in Indonesians with TB. This study was a cross-sectional study of 50 TB outpatients in Jambi city, Indonesia. Sociodemographic characteristics were obtained from medical records. Whole blood was collected, and genomic DNA was isolated. Single nucleotide polymorphisms were determined using polymerase chain reaction-restriction fragment length polymorphism with HaeIII, MboI, and PstI for rs1128503, rs1045642 (ABCB1), and rs3813867 (CYP2E1), respectively. RESULT: The frequency of alleles of each gene was analyzed by Hardy–Weinberg equilibrium. The genetic profiles of ABCB1 rs1128503 and rs1045642 were varied (CC, CT, TT), while CYP2E1 rs3813867 was present in CC (wild type). The genetic variations of ABCB1 and CYP2E1 may have no significant correlation with the duration of TB therapy. Nevertheless, this study may provide as preliminary results for the genetic profiles of ABCB1 (rs1128503, rs1045642) and CYP2E1 (rs3813867) in the Indonesia population. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05711-8. |
format | Online Article Text |
id | pubmed-8325820 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-83258202021-08-02 Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia Barliana, Melisa Intan Kusuma, Arif Satria Wira Insani, Widya Norma Alfian, Sofa Dewi Diantini, Ajeng Mutakin, Mutakin Rostinawati, Tina Herlambang, Herlambang Puspitasari, Irma Melyani Suwantika, Auliya Abdurrohim Abdulah, Rizky BMC Res Notes Research Note OBJECTIVE: The risk of contracting tuberculosis (TB) and the efficacy of TB therapy are affected by several factors, including genetic variation among populations. In the Indonesian population, data on the genes involved in drug transport and metabolism of TB therapy are limited. The aim of this study was to identify the genetic profile of the ABCB1 gene (rs1128503 and rs1045642) and CYP2E1 gene (rs3813867) in Indonesians with TB. This study was a cross-sectional study of 50 TB outpatients in Jambi city, Indonesia. Sociodemographic characteristics were obtained from medical records. Whole blood was collected, and genomic DNA was isolated. Single nucleotide polymorphisms were determined using polymerase chain reaction-restriction fragment length polymorphism with HaeIII, MboI, and PstI for rs1128503, rs1045642 (ABCB1), and rs3813867 (CYP2E1), respectively. RESULT: The frequency of alleles of each gene was analyzed by Hardy–Weinberg equilibrium. The genetic profiles of ABCB1 rs1128503 and rs1045642 were varied (CC, CT, TT), while CYP2E1 rs3813867 was present in CC (wild type). The genetic variations of ABCB1 and CYP2E1 may have no significant correlation with the duration of TB therapy. Nevertheless, this study may provide as preliminary results for the genetic profiles of ABCB1 (rs1128503, rs1045642) and CYP2E1 (rs3813867) in the Indonesia population. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05711-8. BioMed Central 2021-07-31 /pmc/articles/PMC8325820/ /pubmed/34332626 http://dx.doi.org/10.1186/s13104-021-05711-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Note Barliana, Melisa Intan Kusuma, Arif Satria Wira Insani, Widya Norma Alfian, Sofa Dewi Diantini, Ajeng Mutakin, Mutakin Rostinawati, Tina Herlambang, Herlambang Puspitasari, Irma Melyani Suwantika, Auliya Abdurrohim Abdulah, Rizky Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia |
title | Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia |
title_full | Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia |
title_fullStr | Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia |
title_full_unstemmed | Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia |
title_short | Genetic variation of ABCB1 (rs1128503, rs1045642) and CYP2E1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in Indonesia |
title_sort | genetic variation of abcb1 (rs1128503, rs1045642) and cyp2e1 rs3813867 with the duration of tuberculosis therapy: a pilot study among tuberculosis patients in indonesia |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8325820/ https://www.ncbi.nlm.nih.gov/pubmed/34332626 http://dx.doi.org/10.1186/s13104-021-05711-8 |
work_keys_str_mv | AT barlianamelisaintan geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT kusumaarifsatriawira geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT insaniwidyanorma geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT alfiansofadewi geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT diantiniajeng geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT mutakinmutakin geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT rostinawatitina geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT herlambangherlambang geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT puspitasariirmamelyani geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT suwantikaauliyaabdurrohim geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia AT abdulahrizky geneticvariationofabcb1rs1128503rs1045642andcyp2e1rs3813867withthedurationoftuberculosistherapyapilotstudyamongtuberculosispatientsinindonesia |