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Using comprehensive machine‐learning models to classify complex morphological characters

1. Recognizing and classifying multiple morphological features, such as patterns, sizes, and textures, can provide a comprehensive understanding of their variability and phenotypic evolution. Yet, quantitatively measuring complex morphological characters remains challenging. 2. We provide a machine...

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Detalles Bibliográficos
Autores principales: Teng, Dequn, Li, Fengyuan, Zhang, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8328437/
https://www.ncbi.nlm.nih.gov/pubmed/34367585
http://dx.doi.org/10.1002/ece3.7845
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author Teng, Dequn
Li, Fengyuan
Zhang, Wei
author_facet Teng, Dequn
Li, Fengyuan
Zhang, Wei
author_sort Teng, Dequn
collection PubMed
description 1. Recognizing and classifying multiple morphological features, such as patterns, sizes, and textures, can provide a comprehensive understanding of their variability and phenotypic evolution. Yet, quantitatively measuring complex morphological characters remains challenging. 2. We provide a machine learning‐based pipeline (SVMorph) to consider and classify complex morphological characters in multiple organisms that have either small or large datasets. 3. Our pipeline integrates two descriptors, histogram of oriented gradient and local binary pattern, to meet various classification needs. We also optimized feature extraction by adding image data augmentation to improve model generalizability. 4. We tested SVMorph on two real‐world examples to demonstrate that it can be used with small training datasets and limited computational resources. Comparing with multiple CNN‐based methods and traditional techniques, we show that SVMorph is reliable and fast in texture‐based individual classification. Thus, SVMorph can be used to efficiently classify multiple morphological characters in distinct nonmodel organisms.
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spelling pubmed-83284372021-08-06 Using comprehensive machine‐learning models to classify complex morphological characters Teng, Dequn Li, Fengyuan Zhang, Wei Ecol Evol Original Research 1. Recognizing and classifying multiple morphological features, such as patterns, sizes, and textures, can provide a comprehensive understanding of their variability and phenotypic evolution. Yet, quantitatively measuring complex morphological characters remains challenging. 2. We provide a machine learning‐based pipeline (SVMorph) to consider and classify complex morphological characters in multiple organisms that have either small or large datasets. 3. Our pipeline integrates two descriptors, histogram of oriented gradient and local binary pattern, to meet various classification needs. We also optimized feature extraction by adding image data augmentation to improve model generalizability. 4. We tested SVMorph on two real‐world examples to demonstrate that it can be used with small training datasets and limited computational resources. Comparing with multiple CNN‐based methods and traditional techniques, we show that SVMorph is reliable and fast in texture‐based individual classification. Thus, SVMorph can be used to efficiently classify multiple morphological characters in distinct nonmodel organisms. John Wiley and Sons Inc. 2021-06-27 /pmc/articles/PMC8328437/ /pubmed/34367585 http://dx.doi.org/10.1002/ece3.7845 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Teng, Dequn
Li, Fengyuan
Zhang, Wei
Using comprehensive machine‐learning models to classify complex morphological characters
title Using comprehensive machine‐learning models to classify complex morphological characters
title_full Using comprehensive machine‐learning models to classify complex morphological characters
title_fullStr Using comprehensive machine‐learning models to classify complex morphological characters
title_full_unstemmed Using comprehensive machine‐learning models to classify complex morphological characters
title_short Using comprehensive machine‐learning models to classify complex morphological characters
title_sort using comprehensive machine‐learning models to classify complex morphological characters
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8328437/
https://www.ncbi.nlm.nih.gov/pubmed/34367585
http://dx.doi.org/10.1002/ece3.7845
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