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Using comprehensive machine‐learning models to classify complex morphological characters
1. Recognizing and classifying multiple morphological features, such as patterns, sizes, and textures, can provide a comprehensive understanding of their variability and phenotypic evolution. Yet, quantitatively measuring complex morphological characters remains challenging. 2. We provide a machine...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8328437/ https://www.ncbi.nlm.nih.gov/pubmed/34367585 http://dx.doi.org/10.1002/ece3.7845 |
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author | Teng, Dequn Li, Fengyuan Zhang, Wei |
author_facet | Teng, Dequn Li, Fengyuan Zhang, Wei |
author_sort | Teng, Dequn |
collection | PubMed |
description | 1. Recognizing and classifying multiple morphological features, such as patterns, sizes, and textures, can provide a comprehensive understanding of their variability and phenotypic evolution. Yet, quantitatively measuring complex morphological characters remains challenging. 2. We provide a machine learning‐based pipeline (SVMorph) to consider and classify complex morphological characters in multiple organisms that have either small or large datasets. 3. Our pipeline integrates two descriptors, histogram of oriented gradient and local binary pattern, to meet various classification needs. We also optimized feature extraction by adding image data augmentation to improve model generalizability. 4. We tested SVMorph on two real‐world examples to demonstrate that it can be used with small training datasets and limited computational resources. Comparing with multiple CNN‐based methods and traditional techniques, we show that SVMorph is reliable and fast in texture‐based individual classification. Thus, SVMorph can be used to efficiently classify multiple morphological characters in distinct nonmodel organisms. |
format | Online Article Text |
id | pubmed-8328437 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-83284372021-08-06 Using comprehensive machine‐learning models to classify complex morphological characters Teng, Dequn Li, Fengyuan Zhang, Wei Ecol Evol Original Research 1. Recognizing and classifying multiple morphological features, such as patterns, sizes, and textures, can provide a comprehensive understanding of their variability and phenotypic evolution. Yet, quantitatively measuring complex morphological characters remains challenging. 2. We provide a machine learning‐based pipeline (SVMorph) to consider and classify complex morphological characters in multiple organisms that have either small or large datasets. 3. Our pipeline integrates two descriptors, histogram of oriented gradient and local binary pattern, to meet various classification needs. We also optimized feature extraction by adding image data augmentation to improve model generalizability. 4. We tested SVMorph on two real‐world examples to demonstrate that it can be used with small training datasets and limited computational resources. Comparing with multiple CNN‐based methods and traditional techniques, we show that SVMorph is reliable and fast in texture‐based individual classification. Thus, SVMorph can be used to efficiently classify multiple morphological characters in distinct nonmodel organisms. John Wiley and Sons Inc. 2021-06-27 /pmc/articles/PMC8328437/ /pubmed/34367585 http://dx.doi.org/10.1002/ece3.7845 Text en © 2021 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Teng, Dequn Li, Fengyuan Zhang, Wei Using comprehensive machine‐learning models to classify complex morphological characters |
title | Using comprehensive machine‐learning models to classify complex morphological characters |
title_full | Using comprehensive machine‐learning models to classify complex morphological characters |
title_fullStr | Using comprehensive machine‐learning models to classify complex morphological characters |
title_full_unstemmed | Using comprehensive machine‐learning models to classify complex morphological characters |
title_short | Using comprehensive machine‐learning models to classify complex morphological characters |
title_sort | using comprehensive machine‐learning models to classify complex morphological characters |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8328437/ https://www.ncbi.nlm.nih.gov/pubmed/34367585 http://dx.doi.org/10.1002/ece3.7845 |
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