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The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair
The Watson–Crick base pair proton transfer tautomers would be widely considered as a source of spontaneous mutations in DNA replication if not for their short lifetimes and thermodynamic instability. This work investigates the effects external electric fields have on the stability of the guanine–cyt...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330266/ https://www.ncbi.nlm.nih.gov/pubmed/33735350 http://dx.doi.org/10.1039/d0cp06218a |
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author | Gheorghiu, Alexander Coveney, Peter V. Arabi, Alya A. |
author_facet | Gheorghiu, Alexander Coveney, Peter V. Arabi, Alya A. |
author_sort | Gheorghiu, Alexander |
collection | PubMed |
description | The Watson–Crick base pair proton transfer tautomers would be widely considered as a source of spontaneous mutations in DNA replication if not for their short lifetimes and thermodynamic instability. This work investigates the effects external electric fields have on the stability of the guanine–cytosine proton transfer tautomers within a realistic strand of aqueous DNA using a combination of ensemble-based classical molecular dynamics (MD) coupled to quantum mechanics/molecular mechanics (QM/MM). Performing an ensemble of calculations accounts for the stochastic aspects of the simulations while allowing for easier identification of systematic errors. The methodology applied in this work has previously been shown to estimate base pair proton transfer rate coefficients that are in good agreement with recent experimental data. A range of electric fields in the order of 10(4) to 10(9) V m(−1) is investigated based on their real-life medicinal applications which include gene therapy and cancer treatments. The MD trajectories confirm that electric fields up to 1.00 × 10(9) V m(−1) have a negligible influence on the structure of the base pairs within DNA. The QM/MM results show that the application of large external electric fields (1.00 × 10(9) V m(−1)) parallel to the hydrogen bonds increases the thermodynamic population of the tautomers by up to one order of magnitude; moreover, the lifetimes of the tautomers remain insignificant when compared to the timescale of DNA replication. |
format | Online Article Text |
id | pubmed-8330266 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-83302662021-08-09 The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair Gheorghiu, Alexander Coveney, Peter V. Arabi, Alya A. Phys Chem Chem Phys Chemistry The Watson–Crick base pair proton transfer tautomers would be widely considered as a source of spontaneous mutations in DNA replication if not for their short lifetimes and thermodynamic instability. This work investigates the effects external electric fields have on the stability of the guanine–cytosine proton transfer tautomers within a realistic strand of aqueous DNA using a combination of ensemble-based classical molecular dynamics (MD) coupled to quantum mechanics/molecular mechanics (QM/MM). Performing an ensemble of calculations accounts for the stochastic aspects of the simulations while allowing for easier identification of systematic errors. The methodology applied in this work has previously been shown to estimate base pair proton transfer rate coefficients that are in good agreement with recent experimental data. A range of electric fields in the order of 10(4) to 10(9) V m(−1) is investigated based on their real-life medicinal applications which include gene therapy and cancer treatments. The MD trajectories confirm that electric fields up to 1.00 × 10(9) V m(−1) have a negligible influence on the structure of the base pairs within DNA. The QM/MM results show that the application of large external electric fields (1.00 × 10(9) V m(−1)) parallel to the hydrogen bonds increases the thermodynamic population of the tautomers by up to one order of magnitude; moreover, the lifetimes of the tautomers remain insignificant when compared to the timescale of DNA replication. The Royal Society of Chemistry 2021-02-23 /pmc/articles/PMC8330266/ /pubmed/33735350 http://dx.doi.org/10.1039/d0cp06218a Text en This journal is © the Owner Societies https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Gheorghiu, Alexander Coveney, Peter V. Arabi, Alya A. The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair |
title | The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair |
title_full | The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair |
title_fullStr | The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair |
title_full_unstemmed | The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair |
title_short | The influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair |
title_sort | influence of external electric fields on proton transfer tautomerism in the guanine–cytosine base pair |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330266/ https://www.ncbi.nlm.nih.gov/pubmed/33735350 http://dx.doi.org/10.1039/d0cp06218a |
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