The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae)

Paphiopedilum parishii (Rchb. f.) Stein is an endangered and rare species with highly ornamental value. In this study, we report the complete chloroplast genome of P. parishii using the Illumina sequencing data. The total genome of P. parishii is 154,689 bp in length and the GC content is 35.9%, wit...

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Autores principales: Kao, Huixia, Zhao, Yuxin, Yang, Mingqi, Sun, Yongjiang, Cheng, Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330699/
https://www.ncbi.nlm.nih.gov/pubmed/34377815
http://dx.doi.org/10.1080/23802359.2021.1959437
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author Kao, Huixia
Zhao, Yuxin
Yang, Mingqi
Sun, Yongjiang
Cheng, Jin
author_facet Kao, Huixia
Zhao, Yuxin
Yang, Mingqi
Sun, Yongjiang
Cheng, Jin
author_sort Kao, Huixia
collection PubMed
description Paphiopedilum parishii (Rchb. f.) Stein is an endangered and rare species with highly ornamental value. In this study, we report the complete chloroplast genome of P. parishii using the Illumina sequencing data. The total genome of P. parishii is 154,689 bp in length and the GC content is 35.9%, with a pair of inverted repeats (IRs) regions of 32,690 bp each, a large single-copy region (LSC) of 86,863 bp and a small single-copy region (SSC) of 2,446 bp. The chloroplast genome encoded 127 genes, including 82 protein-coding genes (CDS), 8 rRNA genes and 37 tRNA genes. The phylogenetic tree showed that P. parishii was clustered with other species in Paphiopedilum with strong support based on the complete chloroplast genome.
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spelling pubmed-83306992021-08-09 The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae) Kao, Huixia Zhao, Yuxin Yang, Mingqi Sun, Yongjiang Cheng, Jin Mitochondrial DNA B Resour Mitogenome Announcement Paphiopedilum parishii (Rchb. f.) Stein is an endangered and rare species with highly ornamental value. In this study, we report the complete chloroplast genome of P. parishii using the Illumina sequencing data. The total genome of P. parishii is 154,689 bp in length and the GC content is 35.9%, with a pair of inverted repeats (IRs) regions of 32,690 bp each, a large single-copy region (LSC) of 86,863 bp and a small single-copy region (SSC) of 2,446 bp. The chloroplast genome encoded 127 genes, including 82 protein-coding genes (CDS), 8 rRNA genes and 37 tRNA genes. The phylogenetic tree showed that P. parishii was clustered with other species in Paphiopedilum with strong support based on the complete chloroplast genome. Taylor & Francis 2021-07-28 /pmc/articles/PMC8330699/ /pubmed/34377815 http://dx.doi.org/10.1080/23802359.2021.1959437 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Kao, Huixia
Zhao, Yuxin
Yang, Mingqi
Sun, Yongjiang
Cheng, Jin
The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae)
title The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae)
title_full The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae)
title_fullStr The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae)
title_full_unstemmed The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae)
title_short The complete chloroplast genome sequences of an endangered orchid species Paphiopedilum parishii (Orchidaceae)
title_sort complete chloroplast genome sequences of an endangered orchid species paphiopedilum parishii (orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330699/
https://www.ncbi.nlm.nih.gov/pubmed/34377815
http://dx.doi.org/10.1080/23802359.2021.1959437
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