Cargando…

Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia

In this study, we sequenced the complete plastid genome (plastome) of Neolitsea aciculata, an evergreen broad-leaved tree endemic to East Asia, a woody component of East Asian warm-temperate and subtropical forests across China, Korea, and Japan. The plastome of N. aciculata is assembled as a single...

Descripción completa

Detalles Bibliográficos
Autores principales: Han, Eun-Kyeong, Amarsanaa, Gantsetseg, Kim, Jung-Hyun, So, Soonku, Choi, In-Su, Lee, Jung-Hyun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330707/
https://www.ncbi.nlm.nih.gov/pubmed/34377827
http://dx.doi.org/10.1080/23802359.2021.1959457
_version_ 1783732775389495296
author Han, Eun-Kyeong
Amarsanaa, Gantsetseg
Kim, Jung-Hyun
So, Soonku
Choi, In-Su
Lee, Jung-Hyun
author_facet Han, Eun-Kyeong
Amarsanaa, Gantsetseg
Kim, Jung-Hyun
So, Soonku
Choi, In-Su
Lee, Jung-Hyun
author_sort Han, Eun-Kyeong
collection PubMed
description In this study, we sequenced the complete plastid genome (plastome) of Neolitsea aciculata, an evergreen broad-leaved tree endemic to East Asia, a woody component of East Asian warm-temperate and subtropical forests across China, Korea, and Japan. The plastome of N. aciculata is assembled as a single contig (152,722 bp). A large and a small single copy (93,785 and 18,795 bp, respectively) of the genome are separated by a pair of inverted repeats (20,071 bp). The genome consists of 126 genes, including 80 protein-coding, eight ribosomal RNA, and 36 transfer RNA genes. Two genes in the IR region (ycf1 and ycf2) are pseudogenized. Our phylogenetic analysis revealed the phylogenetic position of N. aciculata in a highly supported clade of the genus Neolitsea along with other two congeners, N. pallens and N. sericea.
format Online
Article
Text
id pubmed-8330707
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-83307072021-08-09 Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia Han, Eun-Kyeong Amarsanaa, Gantsetseg Kim, Jung-Hyun So, Soonku Choi, In-Su Lee, Jung-Hyun Mitochondrial DNA B Resour Mitogenome Announcement In this study, we sequenced the complete plastid genome (plastome) of Neolitsea aciculata, an evergreen broad-leaved tree endemic to East Asia, a woody component of East Asian warm-temperate and subtropical forests across China, Korea, and Japan. The plastome of N. aciculata is assembled as a single contig (152,722 bp). A large and a small single copy (93,785 and 18,795 bp, respectively) of the genome are separated by a pair of inverted repeats (20,071 bp). The genome consists of 126 genes, including 80 protein-coding, eight ribosomal RNA, and 36 transfer RNA genes. Two genes in the IR region (ycf1 and ycf2) are pseudogenized. Our phylogenetic analysis revealed the phylogenetic position of N. aciculata in a highly supported clade of the genus Neolitsea along with other two congeners, N. pallens and N. sericea. Taylor & Francis 2021-08-02 /pmc/articles/PMC8330707/ /pubmed/34377827 http://dx.doi.org/10.1080/23802359.2021.1959457 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Han, Eun-Kyeong
Amarsanaa, Gantsetseg
Kim, Jung-Hyun
So, Soonku
Choi, In-Su
Lee, Jung-Hyun
Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia
title Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia
title_full Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia
title_fullStr Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia
title_full_unstemmed Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia
title_short Complete plastid genome sequence of Neolitsea aciculata (Laurales: Lauraceae), an evergreen broad-leaved tree endemic to East Asia
title_sort complete plastid genome sequence of neolitsea aciculata (laurales: lauraceae), an evergreen broad-leaved tree endemic to east asia
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330707/
https://www.ncbi.nlm.nih.gov/pubmed/34377827
http://dx.doi.org/10.1080/23802359.2021.1959457
work_keys_str_mv AT haneunkyeong completeplastidgenomesequenceofneolitseaaciculatalauraleslauraceaeanevergreenbroadleavedtreeendemictoeastasia
AT amarsanaagantsetseg completeplastidgenomesequenceofneolitseaaciculatalauraleslauraceaeanevergreenbroadleavedtreeendemictoeastasia
AT kimjunghyun completeplastidgenomesequenceofneolitseaaciculatalauraleslauraceaeanevergreenbroadleavedtreeendemictoeastasia
AT sosoonku completeplastidgenomesequenceofneolitseaaciculatalauraleslauraceaeanevergreenbroadleavedtreeendemictoeastasia
AT choiinsu completeplastidgenomesequenceofneolitseaaciculatalauraleslauraceaeanevergreenbroadleavedtreeendemictoeastasia
AT leejunghyun completeplastidgenomesequenceofneolitseaaciculatalauraleslauraceaeanevergreenbroadleavedtreeendemictoeastasia