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Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)
Salix gordejevii is an endemic species in northern China. The analysis of the complete chloroplast genome of S. gordejevii can offer a referential basis for identifying and utilizing Salix germplasm resources. In this study, we obtained chloroplast DNA from S. gordejevii and characterized it. The co...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330744/ https://www.ncbi.nlm.nih.gov/pubmed/34377810 http://dx.doi.org/10.1080/23802359.2021.1959438 |
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author | Wei, Yinghao Li, Xiaoping |
author_facet | Wei, Yinghao Li, Xiaoping |
author_sort | Wei, Yinghao |
collection | PubMed |
description | Salix gordejevii is an endemic species in northern China. The analysis of the complete chloroplast genome of S. gordejevii can offer a referential basis for identifying and utilizing Salix germplasm resources. In this study, we obtained chloroplast DNA from S. gordejevii and characterized it. The complete chloroplast genome of S. gordejevii is 155,491 bp in length, comprising a pair of inverted repeats (IR, 27,408 bp), a large single-copy region (LSC, 84,367 bp), and a small single-copy region (SSC, 16,309 bp). We annotated 117 genes in total, including 80 protein-coding genes, 32 tRNA genes, four rRNA genes, and one pseudogene (ycf1). A maximum-likelihood phylogenetic tree was built with MEGA-X and showed that the chloroplast of S. gordejevii has the closest relationship with that of S. magnifica compared to the other reported Salix genomes. |
format | Online Article Text |
id | pubmed-8330744 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-83307442021-08-09 Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) Wei, Yinghao Li, Xiaoping Mitochondrial DNA B Resour Mitogenome Announcement Salix gordejevii is an endemic species in northern China. The analysis of the complete chloroplast genome of S. gordejevii can offer a referential basis for identifying and utilizing Salix germplasm resources. In this study, we obtained chloroplast DNA from S. gordejevii and characterized it. The complete chloroplast genome of S. gordejevii is 155,491 bp in length, comprising a pair of inverted repeats (IR, 27,408 bp), a large single-copy region (LSC, 84,367 bp), and a small single-copy region (SSC, 16,309 bp). We annotated 117 genes in total, including 80 protein-coding genes, 32 tRNA genes, four rRNA genes, and one pseudogene (ycf1). A maximum-likelihood phylogenetic tree was built with MEGA-X and showed that the chloroplast of S. gordejevii has the closest relationship with that of S. magnifica compared to the other reported Salix genomes. Taylor & Francis 2021-07-27 /pmc/articles/PMC8330744/ /pubmed/34377810 http://dx.doi.org/10.1080/23802359.2021.1959438 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wei, Yinghao Li, Xiaoping Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) |
title | Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) |
title_full | Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) |
title_short | Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) |
title_sort | characterization of the complete chloroplast genome of salix gordejevii (salicaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330744/ https://www.ncbi.nlm.nih.gov/pubmed/34377810 http://dx.doi.org/10.1080/23802359.2021.1959438 |
work_keys_str_mv | AT weiyinghao characterizationofthecompletechloroplastgenomeofsalixgordejeviisalicaceae AT lixiaoping characterizationofthecompletechloroplastgenomeofsalixgordejeviisalicaceae |