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Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)

Salix gordejevii is an endemic species in northern China. The analysis of the complete chloroplast genome of S. gordejevii can offer a referential basis for identifying and utilizing Salix germplasm resources. In this study, we obtained chloroplast DNA from S. gordejevii and characterized it. The co...

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Autores principales: Wei, Yinghao, Li, Xiaoping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330744/
https://www.ncbi.nlm.nih.gov/pubmed/34377810
http://dx.doi.org/10.1080/23802359.2021.1959438
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author Wei, Yinghao
Li, Xiaoping
author_facet Wei, Yinghao
Li, Xiaoping
author_sort Wei, Yinghao
collection PubMed
description Salix gordejevii is an endemic species in northern China. The analysis of the complete chloroplast genome of S. gordejevii can offer a referential basis for identifying and utilizing Salix germplasm resources. In this study, we obtained chloroplast DNA from S. gordejevii and characterized it. The complete chloroplast genome of S. gordejevii is 155,491 bp in length, comprising a pair of inverted repeats (IR, 27,408 bp), a large single-copy region (LSC, 84,367 bp), and a small single-copy region (SSC, 16,309 bp). We annotated 117 genes in total, including 80 protein-coding genes, 32 tRNA genes, four rRNA genes, and one pseudogene (ycf1). A maximum-likelihood phylogenetic tree was built with MEGA-X and showed that the chloroplast of S. gordejevii has the closest relationship with that of S. magnifica compared to the other reported Salix genomes.
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spelling pubmed-83307442021-08-09 Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae) Wei, Yinghao Li, Xiaoping Mitochondrial DNA B Resour Mitogenome Announcement Salix gordejevii is an endemic species in northern China. The analysis of the complete chloroplast genome of S. gordejevii can offer a referential basis for identifying and utilizing Salix germplasm resources. In this study, we obtained chloroplast DNA from S. gordejevii and characterized it. The complete chloroplast genome of S. gordejevii is 155,491 bp in length, comprising a pair of inverted repeats (IR, 27,408 bp), a large single-copy region (LSC, 84,367 bp), and a small single-copy region (SSC, 16,309 bp). We annotated 117 genes in total, including 80 protein-coding genes, 32 tRNA genes, four rRNA genes, and one pseudogene (ycf1). A maximum-likelihood phylogenetic tree was built with MEGA-X and showed that the chloroplast of S. gordejevii has the closest relationship with that of S. magnifica compared to the other reported Salix genomes. Taylor & Francis 2021-07-27 /pmc/articles/PMC8330744/ /pubmed/34377810 http://dx.doi.org/10.1080/23802359.2021.1959438 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wei, Yinghao
Li, Xiaoping
Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)
title Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)
title_full Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)
title_fullStr Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)
title_short Characterization of the complete chloroplast genome of Salix gordejevii (Salicaceae)
title_sort characterization of the complete chloroplast genome of salix gordejevii (salicaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8330744/
https://www.ncbi.nlm.nih.gov/pubmed/34377810
http://dx.doi.org/10.1080/23802359.2021.1959438
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