Cargando…

Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies

Parasitism emerges readily in models and laboratory experiments of RNA world and would lead to extinction unless prevented by compartmentalization or spatial patterning. Modelling replication as an active computational process opens up many degrees of freedom that are exploited to meet environmental...

Descripción completa

Detalles Bibliográficos
Autores principales: Hickinbotham, Simon J., Stepney, Susan, Hogeweg, Paulien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8334846/
https://www.ncbi.nlm.nih.gov/pubmed/34386257
http://dx.doi.org/10.1098/rsos.210441
_version_ 1783733081955368960
author Hickinbotham, Simon J.
Stepney, Susan
Hogeweg, Paulien
author_facet Hickinbotham, Simon J.
Stepney, Susan
Hogeweg, Paulien
author_sort Hickinbotham, Simon J.
collection PubMed
description Parasitism emerges readily in models and laboratory experiments of RNA world and would lead to extinction unless prevented by compartmentalization or spatial patterning. Modelling replication as an active computational process opens up many degrees of freedom that are exploited to meet environmental challenges, and to modify the evolutionary process itself. Here, we use automata chemistry models and spatial RNA-world models to study the emergence of parasitism and the complexity that evolves in response. The system is initialized with a hand-designed replicator that copies other replicators with a small chance of point mutation. Almost immediately, short parasites arise; these are copied more quickly, and so have an evolutionary advantage. The replicators also become shorter, and so are replicated faster; they evolve a mechanism to slow down replication, which reduces the difference of replication rate of replicators and parasites. They also evolve explicit mechanisms to discriminate copies of self from parasites; these mechanisms become increasingly complex. New parasite species continually arise from mutated replicators, rather than from evolving parasite lineages. Evolution itself evolves, e.g. by effectively increasing point mutation rates, and by generating novel emergent mutational operators. Thus, parasitism drives the evolution of complex replicators and complex ecosystems.
format Online
Article
Text
id pubmed-8334846
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher The Royal Society
record_format MEDLINE/PubMed
spelling pubmed-83348462021-08-11 Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies Hickinbotham, Simon J. Stepney, Susan Hogeweg, Paulien R Soc Open Sci Computer Science and Artificial Intelligence Parasitism emerges readily in models and laboratory experiments of RNA world and would lead to extinction unless prevented by compartmentalization or spatial patterning. Modelling replication as an active computational process opens up many degrees of freedom that are exploited to meet environmental challenges, and to modify the evolutionary process itself. Here, we use automata chemistry models and spatial RNA-world models to study the emergence of parasitism and the complexity that evolves in response. The system is initialized with a hand-designed replicator that copies other replicators with a small chance of point mutation. Almost immediately, short parasites arise; these are copied more quickly, and so have an evolutionary advantage. The replicators also become shorter, and so are replicated faster; they evolve a mechanism to slow down replication, which reduces the difference of replication rate of replicators and parasites. They also evolve explicit mechanisms to discriminate copies of self from parasites; these mechanisms become increasingly complex. New parasite species continually arise from mutated replicators, rather than from evolving parasite lineages. Evolution itself evolves, e.g. by effectively increasing point mutation rates, and by generating novel emergent mutational operators. Thus, parasitism drives the evolution of complex replicators and complex ecosystems. The Royal Society 2021-08-04 /pmc/articles/PMC8334846/ /pubmed/34386257 http://dx.doi.org/10.1098/rsos.210441 Text en © 2021 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Computer Science and Artificial Intelligence
Hickinbotham, Simon J.
Stepney, Susan
Hogeweg, Paulien
Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies
title Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies
title_full Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies
title_fullStr Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies
title_full_unstemmed Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies
title_short Nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies
title_sort nothing in evolution makes sense except in the light of parasitism: evolution of complex replication strategies
topic Computer Science and Artificial Intelligence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8334846/
https://www.ncbi.nlm.nih.gov/pubmed/34386257
http://dx.doi.org/10.1098/rsos.210441
work_keys_str_mv AT hickinbothamsimonj nothinginevolutionmakessenseexceptinthelightofparasitismevolutionofcomplexreplicationstrategies
AT stepneysusan nothinginevolutionmakessenseexceptinthelightofparasitismevolutionofcomplexreplicationstrategies
AT hogewegpaulien nothinginevolutionmakessenseexceptinthelightofparasitismevolutionofcomplexreplicationstrategies