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Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity

BACKGROUND: Conserved syntenic gene complexes are rare in Arthropods and likely only retained due to functional constraint. Numerous sHSPs have been identified in the genomes of insects, some of which are located clustered in close proximity. Previous phylogenetic analyses of these clustered sHSP ha...

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Autores principales: Leask, Megan, Lovegrove, Mackenzie, Walker, Abigail, Duncan, Elizabeth, Dearden, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8336396/
https://www.ncbi.nlm.nih.gov/pubmed/34348652
http://dx.doi.org/10.1186/s12862-021-01885-8
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author Leask, Megan
Lovegrove, Mackenzie
Walker, Abigail
Duncan, Elizabeth
Dearden, Peter
author_facet Leask, Megan
Lovegrove, Mackenzie
Walker, Abigail
Duncan, Elizabeth
Dearden, Peter
author_sort Leask, Megan
collection PubMed
description BACKGROUND: Conserved syntenic gene complexes are rare in Arthropods and likely only retained due to functional constraint. Numerous sHSPs have been identified in the genomes of insects, some of which are located clustered in close proximity. Previous phylogenetic analyses of these clustered sHSP have been limited to a small number of holometabolous insect species and have not determined the pattern of evolution of the clustered sHSP genes (sHSP-C) in insect or Arthropod lineages. RESULTS: Using eight genomes from representative insect orders and three non-insect arthropod genomes we have identified that a syntenic cluster of sHSPs (sHSP-C) is a hallmark of most Arthropod genomes. Using 11 genomes from Hymenopteran species our phylogenetic analyses have refined the evolution of the sHSP-C in Hymenoptera and found that the sHSP-C is order-specific with evidence of birth-and-death evolution in the hymenopteran lineage. Finally we have shown that the honeybee sHSP-C is co-ordinately expressed and is marked by genomic features, including H3K27me3 histone marks consistent with coordinate regulation, during honeybee ovary activation. CONCLUSIONS: The syntenic sHSP-C is present in most insect genomes, and its conserved coordinate expression and regulation implies that it is an integral genomic component of environmental response in arthropods. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12862-021-01885-8.
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spelling pubmed-83363962021-08-06 Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity Leask, Megan Lovegrove, Mackenzie Walker, Abigail Duncan, Elizabeth Dearden, Peter BMC Ecol Evol Research Article BACKGROUND: Conserved syntenic gene complexes are rare in Arthropods and likely only retained due to functional constraint. Numerous sHSPs have been identified in the genomes of insects, some of which are located clustered in close proximity. Previous phylogenetic analyses of these clustered sHSP have been limited to a small number of holometabolous insect species and have not determined the pattern of evolution of the clustered sHSP genes (sHSP-C) in insect or Arthropod lineages. RESULTS: Using eight genomes from representative insect orders and three non-insect arthropod genomes we have identified that a syntenic cluster of sHSPs (sHSP-C) is a hallmark of most Arthropod genomes. Using 11 genomes from Hymenopteran species our phylogenetic analyses have refined the evolution of the sHSP-C in Hymenoptera and found that the sHSP-C is order-specific with evidence of birth-and-death evolution in the hymenopteran lineage. Finally we have shown that the honeybee sHSP-C is co-ordinately expressed and is marked by genomic features, including H3K27me3 histone marks consistent with coordinate regulation, during honeybee ovary activation. CONCLUSIONS: The syntenic sHSP-C is present in most insect genomes, and its conserved coordinate expression and regulation implies that it is an integral genomic component of environmental response in arthropods. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12862-021-01885-8. BioMed Central 2021-08-04 /pmc/articles/PMC8336396/ /pubmed/34348652 http://dx.doi.org/10.1186/s12862-021-01885-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Leask, Megan
Lovegrove, Mackenzie
Walker, Abigail
Duncan, Elizabeth
Dearden, Peter
Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity
title Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity
title_full Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity
title_fullStr Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity
title_full_unstemmed Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity
title_short Evolution and genomic organization of the insect sHSP gene cluster and coordinate regulation in phenotypic plasticity
title_sort evolution and genomic organization of the insect shsp gene cluster and coordinate regulation in phenotypic plasticity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8336396/
https://www.ncbi.nlm.nih.gov/pubmed/34348652
http://dx.doi.org/10.1186/s12862-021-01885-8
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