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Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer

Long non-coding RNAs (lncRNAs) play crucial roles in ovarian cancer (OC) development. However, prognosis-associated lncRNAs (PALs) for OC have not been completely elucidated. Our study aimed to identify the PAL signature of OC. A total of 663 differentially expressed lncRNAs were identified in the d...

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Autores principales: Zheng, Jianfeng, Guo, Jialu, Zhang, Huizhi, Cao, Benben, Xu, Guomin, Zhang, Zhifen, Tong, Jinyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8336869/
https://www.ncbi.nlm.nih.gov/pubmed/34367239
http://dx.doi.org/10.3389/fgene.2021.672674
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author Zheng, Jianfeng
Guo, Jialu
Zhang, Huizhi
Cao, Benben
Xu, Guomin
Zhang, Zhifen
Tong, Jinyi
author_facet Zheng, Jianfeng
Guo, Jialu
Zhang, Huizhi
Cao, Benben
Xu, Guomin
Zhang, Zhifen
Tong, Jinyi
author_sort Zheng, Jianfeng
collection PubMed
description Long non-coding RNAs (lncRNAs) play crucial roles in ovarian cancer (OC) development. However, prognosis-associated lncRNAs (PALs) for OC have not been completely elucidated. Our study aimed to identify the PAL signature of OC. A total of 663 differentially expressed lncRNAs were identified in the databases. According to the weighted gene coexpression analysis, the highly correlated genes were clustered into seven modules related to the clinical phenotype of OC. A total of 25 lncRNAs that were significantly related to overall survival were screened based on univariate Cox regression analysis. The prognostic risk model constructed contained seven PALs based on the parameter λ(min), which could stratify OC patients into two risk groups. The results showed that the risk groups had different overall survival rates in both The Cancer Genome Atlas (TCGA) and two verified Gene Expression Omnibus (GEO) databases. Univariate and multivariate Cox regression analyses confirmed that the risk model was an independent risk factor for OC. Gene enrichment analysis revealed that the identified genes were involved in some pathways of malignancy. The competitive endogenous RNA (ceRNA) network included five PALs, of which four were selected for cell function assays. The four PALs were downregulated in 33 collected OC tissues and 3 OC cell lines relative to the control. They were shown to regulate the proliferative, migratory, and invasive potential of OC cells via Cell Counting Kit-8 (CCK-8) and transwell assays. Our study fills the gaps of the four PALs in OC, which are worthy of further study.
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spelling pubmed-83368692021-08-05 Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer Zheng, Jianfeng Guo, Jialu Zhang, Huizhi Cao, Benben Xu, Guomin Zhang, Zhifen Tong, Jinyi Front Genet Genetics Long non-coding RNAs (lncRNAs) play crucial roles in ovarian cancer (OC) development. However, prognosis-associated lncRNAs (PALs) for OC have not been completely elucidated. Our study aimed to identify the PAL signature of OC. A total of 663 differentially expressed lncRNAs were identified in the databases. According to the weighted gene coexpression analysis, the highly correlated genes were clustered into seven modules related to the clinical phenotype of OC. A total of 25 lncRNAs that were significantly related to overall survival were screened based on univariate Cox regression analysis. The prognostic risk model constructed contained seven PALs based on the parameter λ(min), which could stratify OC patients into two risk groups. The results showed that the risk groups had different overall survival rates in both The Cancer Genome Atlas (TCGA) and two verified Gene Expression Omnibus (GEO) databases. Univariate and multivariate Cox regression analyses confirmed that the risk model was an independent risk factor for OC. Gene enrichment analysis revealed that the identified genes were involved in some pathways of malignancy. The competitive endogenous RNA (ceRNA) network included five PALs, of which four were selected for cell function assays. The four PALs were downregulated in 33 collected OC tissues and 3 OC cell lines relative to the control. They were shown to regulate the proliferative, migratory, and invasive potential of OC cells via Cell Counting Kit-8 (CCK-8) and transwell assays. Our study fills the gaps of the four PALs in OC, which are worthy of further study. Frontiers Media S.A. 2021-07-02 /pmc/articles/PMC8336869/ /pubmed/34367239 http://dx.doi.org/10.3389/fgene.2021.672674 Text en Copyright © 2021 Zheng, Guo, Zhang, Cao, Xu, Zhang and Tong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zheng, Jianfeng
Guo, Jialu
Zhang, Huizhi
Cao, Benben
Xu, Guomin
Zhang, Zhifen
Tong, Jinyi
Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
title Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
title_full Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
title_fullStr Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
title_full_unstemmed Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
title_short Four Prognosis-Associated lncRNAs Serve as Biomarkers in Ovarian Cancer
title_sort four prognosis-associated lncrnas serve as biomarkers in ovarian cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8336869/
https://www.ncbi.nlm.nih.gov/pubmed/34367239
http://dx.doi.org/10.3389/fgene.2021.672674
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