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Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
A detailed description of the structure of the amphibole-supergroup minerals is very challenging owing to their complex chemical composition that renders the process of cation partition extremely difficult, particularly because of the occurrence of multivalent elements. Since amphiboles naturally oc...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337022/ http://dx.doi.org/10.1107/S2052520621004844 |
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author | Ballirano, Paolo Celata, Beatrice Pacella, Alessandro Bosi, Ferdinando |
author_facet | Ballirano, Paolo Celata, Beatrice Pacella, Alessandro Bosi, Ferdinando |
author_sort | Ballirano, Paolo |
collection | PubMed |
description | A detailed description of the structure of the amphibole-supergroup minerals is very challenging owing to their complex chemical composition that renders the process of cation partition extremely difficult, particularly because of the occurrence of multivalent elements. Since amphiboles naturally occur under a fibrous morphology and have largely been used to produce asbestos, there is a growing demand for detailed and accurate structural data in order to study the relationships between structure, composition and toxicity. The present study proposes a recommended refinement procedure for both X-ray single-crystal structure refinement (SREF) and Rietveld analysis for tremolite, selected as a test case. The corresponding structural results are compared to estimate the ‘degree of confidence’ of the Rietveld refinement with regard to SREF. In particular, it is shown that the interpretation of the electron density of the tremolite structure by SREF is model dependent. By assuming that the site-scattering values from SREF should be as close as possible to those from electron microprobe analysis, as a crucial constraint for the correct description of the final crystal-chemical model, it is found that it is best satisfied by using partially ionized scattering curves (SCs) for O and Si, and neutral SCs (neutral oxygen curves or NOCs) for other atoms. This combination leads to the best fit to the diffraction data. Moreover, it is found that Rietveld refinement using NOCs produces the best structural results, in excellent agreement with SREF. It is worth noting that, due to the complexity of the diffraction pattern and the fairly large number of freely refinable parameters, refinements with different combinations of SCs produce results almost indistinguishable from a statistical point of view, albeit showing significant differences from a structural point of view. |
format | Online Article Text |
id | pubmed-8337022 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-83370222021-08-19 Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite Ballirano, Paolo Celata, Beatrice Pacella, Alessandro Bosi, Ferdinando Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers A detailed description of the structure of the amphibole-supergroup minerals is very challenging owing to their complex chemical composition that renders the process of cation partition extremely difficult, particularly because of the occurrence of multivalent elements. Since amphiboles naturally occur under a fibrous morphology and have largely been used to produce asbestos, there is a growing demand for detailed and accurate structural data in order to study the relationships between structure, composition and toxicity. The present study proposes a recommended refinement procedure for both X-ray single-crystal structure refinement (SREF) and Rietveld analysis for tremolite, selected as a test case. The corresponding structural results are compared to estimate the ‘degree of confidence’ of the Rietveld refinement with regard to SREF. In particular, it is shown that the interpretation of the electron density of the tremolite structure by SREF is model dependent. By assuming that the site-scattering values from SREF should be as close as possible to those from electron microprobe analysis, as a crucial constraint for the correct description of the final crystal-chemical model, it is found that it is best satisfied by using partially ionized scattering curves (SCs) for O and Si, and neutral SCs (neutral oxygen curves or NOCs) for other atoms. This combination leads to the best fit to the diffraction data. Moreover, it is found that Rietveld refinement using NOCs produces the best structural results, in excellent agreement with SREF. It is worth noting that, due to the complexity of the diffraction pattern and the fairly large number of freely refinable parameters, refinements with different combinations of SCs produce results almost indistinguishable from a statistical point of view, albeit showing significant differences from a structural point of view. International Union of Crystallography 2021-07-14 /pmc/articles/PMC8337022/ http://dx.doi.org/10.1107/S2052520621004844 Text en © Paolo Ballirano et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Ballirano, Paolo Celata, Beatrice Pacella, Alessandro Bosi, Ferdinando Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite |
title | Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite |
title_full | Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite |
title_fullStr | Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite |
title_full_unstemmed | Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite |
title_short | Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite |
title_sort | recommended x-ray single-crystal structure refinement and rietveld refinement procedure for tremolite |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337022/ http://dx.doi.org/10.1107/S2052520621004844 |
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