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Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite

A detailed description of the structure of the amphibole-supergroup minerals is very challenging owing to their complex chemical composition that renders the process of cation partition extremely difficult, particularly because of the occurrence of multivalent elements. Since amphiboles naturally oc...

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Autores principales: Ballirano, Paolo, Celata, Beatrice, Pacella, Alessandro, Bosi, Ferdinando
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337022/
http://dx.doi.org/10.1107/S2052520621004844
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author Ballirano, Paolo
Celata, Beatrice
Pacella, Alessandro
Bosi, Ferdinando
author_facet Ballirano, Paolo
Celata, Beatrice
Pacella, Alessandro
Bosi, Ferdinando
author_sort Ballirano, Paolo
collection PubMed
description A detailed description of the structure of the amphibole-supergroup minerals is very challenging owing to their complex chemical composition that renders the process of cation partition extremely difficult, particularly because of the occurrence of multivalent elements. Since amphiboles naturally occur under a fibrous morphology and have largely been used to produce asbestos, there is a growing demand for detailed and accurate structural data in order to study the relationships between structure, composition and toxicity. The present study proposes a recommended refinement procedure for both X-ray single-crystal structure refinement (SREF) and Rietveld analysis for tremolite, selected as a test case. The corresponding structural results are compared to estimate the ‘degree of confidence’ of the Rietveld refinement with regard to SREF. In particular, it is shown that the interpretation of the electron density of the tremolite structure by SREF is model dependent. By assuming that the site-scattering values from SREF should be as close as possible to those from electron microprobe analysis, as a crucial constraint for the correct description of the final crystal-chemical model, it is found that it is best satisfied by using partially ionized scattering curves (SCs) for O and Si, and neutral SCs (neutral oxygen curves or NOCs) for other atoms. This combination leads to the best fit to the diffraction data. Moreover, it is found that Rietveld refinement using NOCs produces the best structural results, in excellent agreement with SREF. It is worth noting that, due to the complexity of the diffraction pattern and the fairly large number of freely refinable parameters, refinements with different combinations of SCs produce results almost indistinguishable from a statistical point of view, albeit showing significant differences from a structural point of view.
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spelling pubmed-83370222021-08-19 Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite Ballirano, Paolo Celata, Beatrice Pacella, Alessandro Bosi, Ferdinando Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers A detailed description of the structure of the amphibole-supergroup minerals is very challenging owing to their complex chemical composition that renders the process of cation partition extremely difficult, particularly because of the occurrence of multivalent elements. Since amphiboles naturally occur under a fibrous morphology and have largely been used to produce asbestos, there is a growing demand for detailed and accurate structural data in order to study the relationships between structure, composition and toxicity. The present study proposes a recommended refinement procedure for both X-ray single-crystal structure refinement (SREF) and Rietveld analysis for tremolite, selected as a test case. The corresponding structural results are compared to estimate the ‘degree of confidence’ of the Rietveld refinement with regard to SREF. In particular, it is shown that the interpretation of the electron density of the tremolite structure by SREF is model dependent. By assuming that the site-scattering values from SREF should be as close as possible to those from electron microprobe analysis, as a crucial constraint for the correct description of the final crystal-chemical model, it is found that it is best satisfied by using partially ionized scattering curves (SCs) for O and Si, and neutral SCs (neutral oxygen curves or NOCs) for other atoms. This combination leads to the best fit to the diffraction data. Moreover, it is found that Rietveld refinement using NOCs produces the best structural results, in excellent agreement with SREF. It is worth noting that, due to the complexity of the diffraction pattern and the fairly large number of freely refinable parameters, refinements with different combinations of SCs produce results almost indistinguishable from a statistical point of view, albeit showing significant differences from a structural point of view. International Union of Crystallography 2021-07-14 /pmc/articles/PMC8337022/ http://dx.doi.org/10.1107/S2052520621004844 Text en © Paolo Ballirano et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Ballirano, Paolo
Celata, Beatrice
Pacella, Alessandro
Bosi, Ferdinando
Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
title Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
title_full Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
title_fullStr Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
title_full_unstemmed Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
title_short Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
title_sort recommended x-ray single-crystal structure refinement and rietveld refinement procedure for tremolite
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8337022/
http://dx.doi.org/10.1107/S2052520621004844
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